BtaINT0013987 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015093 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr11:104394797-104395145:+
Coord C1 exon
chr11:104394797-104394932
Coord A exon
chr11:104394933-104395015
Coord C2 exon
chr11:104395016-104395145
Length
83 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
AGCCCCCTGTTCCCCTCCAGGGC
3' ss Score
10.17
Exon sequences
Seq C1 exon
GTTTACAGGCGCTACAGTGAGGAGTACGGCAGCCCCGCCCGCCCCGACATCACCTTCATCTACTTCCAGCCGGAGCAGCGGCGGGCCTGGGCGTGGGTCCCGGTGCAGGGGCCCTGCTCCGTGAGCTGCGGGGCAG
Seq A exon
GTGGGGCCCAGGGCGGGGCTCGCCTGGAAGCCTGGCATGCCACCCGCCCCGTGGAGGTGGCCCAGCCCCCTGTTCCCCTCCAG
Seq C2 exon
GGCTGCGCCAGGTGACCTACAGGTGTCGGGACCAGTCCAGGAGCGAGTGGGTGGAGGCTGCCCACTGTGCAGGGAGCCAGCCCCCCGTGGCATGGTCAGAGACCTGCACCCCTGGGCCCTGCCCCCCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015093:ENSBTAT00000020085:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACAGGCGCTACAGTGAGGA
R:
GACTGGTCCCGACACCTGTAG
Band lengths:
171-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development