BtaINT0017858 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039302 | ANGPTL6
Description
Bos taurus angiopoietin-like 6 (ANGPTL6), mRNA. [Source:RefSeq mRNA;Acc:NM_001128070]
Coordinates
chr7:15880798-15881871:-
Coord C1 exon
chr7:15881601-15881871
Coord A exon
chr7:15881106-15881600
Coord C2 exon
chr7:15880798-15881105
Length
495 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAG
5' ss Score
5.75
3' ss Seq
TTTTTCCCCTCTCCCCTCAGGTA
3' ss Score
14.33
Exon sequences
Seq C1 exon
GTGGGCTTCGGGCAGCCTGATGGGGAATACTGGCTGGGCCTTGAACCTGTGCATCAGCTTACCAGCCGTGGGGACCATGAGCTACTGGTGCTCCTTGAAGACTGGGGAGGCCGTGGGGCACGTGCCCACTATGATGGTTTTTCCCTGGAGCCTGAGAGTGACCACTATCGCCTGCGGCTTGGCCAGTACCATGGAGATGCTGGAGACTCTCTTTCCTGGCACAATGACAAGCCTTTCAGCACCGTGGATAGAGACCGAGACTCCTATTCTG
Seq A exon
GTAAAGGGCTCTTATTTTGGTGGTGTGTCGGGGCAGGATAGAAGACTCTTAATGAGGAAATGAAAGAGGGTGGGGTAAGACTTTCCTCTGGTAGGGATCAGGGCAAACAAGAGAATGGAGGACAGGACTCTTATTCTGGTGAGGGAGTCTACGTTCATTCTCTAATGAGTCAATAAGTCAGGCCCCAGCCTTTGTGAAAGGTGGTGGGGGAAAGGGGGAGCTGTGAGAGCTAGGACTTTTAACTGTTGTAGAAAGAAAGGAGAGGTTGTTTTTTCTGGTAAAGGGATGAGAGGTAAAGCTCCTTGTTTGCAGAAAGGATGGAGGAAAATATGACTTGTACTTTGGTAAGGGGATAAGGAAGAAACTAAGGCTATTACTTTGAAGTAGGGGGACAGAGTATGCCTGGCAAAAGCCTTGTGTTAGTGAGGTGCTGGTAGAGGCTTTTATTCTGGTGAGAAGAATAAAATAAGGCTTTTTTTTCCCCTCTCCCCTCAG
Seq C2 exon
GTAACTGTGCCCTGTACCAGCGGGGAGGCTGGTGGTACCACGCCTGTGCCCACTCCAACCTCAATGGTGTGTGGCATCGTGGTGGCCACTACCGTAGCCGCTACCAGGATGGGGTCTACTGGGCCGAGTTTCGTGGTGGGGCTTACTCTCTCAAGAAGGCTGCCATGCTGATCAGGCCCCTGAGGCCGTGACCCTCTGTCCATCTGTCCCTCAGGTCCCAGGGGATGTGTGTCAGCAGGAGCCCAAGTTGTTCTGGCCACCCCTCCTTCGTGGCTCCATGCAGACCACGCCCACAGACCTCCTCCCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039302:ENSBTAT00000020787:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(57.7=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(38.5=93.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTACCATGGAGATGCTG
R:
CCAGAACAACTTGGGCTCCTG
Band lengths:
346-841
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]