BtaINT0017932 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002392 | ANK2
Description
ankyrin 2, neuronal [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr6:13403381-13406073:-
Coord C1 exon
chr6:13406025-13406073
Coord A exon
chr6:13403410-13406024
Coord C2 exon
chr6:13403381-13403409
Length
2615 bp
Sequences
Splice sites
5' ss Seq
GAAGCAAAA
5' ss Score
-7.64
3' ss Seq
TGTTGTGGATTTGTTTTTATTTA
3' ss Score
-2.04
Exon sequences
Seq C1 exon
TGAAGGCTCTCCATCTTTCTCCTCTTTACCTCTTTGTCCAGCATCTGAA
Seq A exon
GCAAAAGAATTAGATGAAGACATGGTCTCTACAGCTTCTGCTACAGAAATGGAGGTCACAAAACCTGACCAAGCTTTTGAGAGCTTACCAGAGGACTGTTCCATTCAAGATTCACTCATTACTACTCAAACTGATAGATCATCCTTGGATGTTCCAGTGTCAGACCCAACAGAGACTGAGGAAATCTATGATCCTCAAATCATAAGCCCTTATGAAAATGTTCCTTCTCAATCTTTTTTCTCTGGTGAAGAAAGCAAAACCCAAACGGATACAAGGCACACAAGTTTTCATTCTTCTGAAGAGTATTCTGTTACCATCACATCCTCTGTTGAAGATGTAGTAGAGACAAGCTCCTCTGATAAAACTGTTTCAAGTAAAGAAGCTAATTTTGAGGAGCAGGTCTTGGAAGTAGAATCCAAACAAGAGAGTACCTTGCAGGAAATACAGTCACATGGAGCCTCCTCATCTTTGGAGCCACCTGTACCAAAAACATCAACAGTTGTCAGTGAACAAATAAGCAAAGTCATCATCACAAAAACTGATGTGGATTCTGATTCCTGGAGTGAAATCCGTGAGGATGACGAAGCCTTTGAGGCTCGAGTGAAAGAGGAAGAACAGAAGATATTTGGTTTGATGGTAGACAGACAGTCACAGGGTACCACCCCTGACACCACTCCTGCTAGGACCCCAACTGAAGAGGGGACCCCAACCAGTGAGCAAAATCCATTTCTCTTTCAGGAAGGAAAATTGTTTGAGATGACCCGAAGTGGTGCCATTGATATGACCAAAAGGTCCTATGCCGATGAAAGCTTTCACTTTTTCCAAATTGGGCAAGAATCCAGGGAAGAGGCTGTCTCACAAGACATGAAAGAAGGAGGTACAGGTGCTGAGGCCCCACAGGTGGAGACATCAGCTGAGTCATTAACACTCTCAGAATCAAAAGAAACAGTGGATGATGAAGCAGAGTTACTCCCAGATGACCTGAGTGAGGAGGTAGAAGAAATACACACTTCAGATACCCCACTTAGCTCCCAAATAGACATTTCAGCCTCCACAGAAACATCCATGAAAGAGGCTACTTCTACAGGGCTTGAGGACCTACCCACCAGGCAAATGGGTGATTCTCTTCCTCCATCCAGCGAGAAGCAGACCACTTGCCCTGACTTCCCTGAACAAGTTGTACAAGTTCAGTTAGATTTTTCCACAGTCACTAGGTCTGTATATTCAGATCGGGGTGATGATTCTCCCGATTCCTCCCCAGAGGAACAGAAATCAGTCATTGAAATCCCTACTGCAACCATGGAGAATGTGCCTTCTACTGAGAGCAAATCCAAAATCCCTGTAAGGACTATCCCCACTTCAACCTCAATACCTCCATCGGTGGAATATGAGAGTTCCCTTTCTGAAGATTTTCTGCCCAGCCTGGATGAGGAAAGTAAAGAAGATGAAGCAAAACCAAAGTCTAAAATCCCCGTGAAAGCACCTGCCCAAAGAGTGGAGCAGCAGCCTTCACATCTAGACTCACCTCTAAAGAAGACAGGTCGTCCCCAGGGACAGGACTTGACAAGCAGTGCACCAGATGATAGAAGCAAATCTGAATCTGATGCCAGTTTGGACGTGAAGACCAAATGTCCAGTAGAAACTAGAAGTTACACTGAGGCAGAAATAGAAAGCACAGGTGAGGAAGAGGAGCTTGAGTTAGAATCAGAGGAAGGGGCCACAAGACCAAAGATATTTGCATCCCGATTGCCAGTAAAGAGCAAAAGCACCGCATCTTCCTGCAGGGGGCCCACAAGCCCCACAAAAGACAATAAGGAGCATTTCTTTGATCTTTACAGGAACTCCATAGAATTCTTTGAGGAGATTAGTGATGAAGCTTCCAAGTTAGTGGATAGACTTACACAGTCAGAAAGGGAGCAAGATTTAGTTTCAGATGATGAAAGTAGTAGTGCCCTGGAAGTTTCAGTAATTGAAAATCTGCCACCTGTTGAGACCGAGAACTCAATTCCTGAGGACCTCTTTGACACAAGGCCCATTTGGGATGAGTCCATTGAGACTCTGATCGAACGCATCCCTGATGAAAATGGCCATGACCATGCTGAAGGTATTTGCCAGCCACTGGGATTCCCTGTGCTACGCATGTCATAAATTTGATATAGTTTTATTTTTTGTATGTCTGTTTTAGTTGGTGATTTGTGTCTCATTTCCTTTAAGCTTTCTGTAGTGGTTACTATGTTTGTGTAAGCCCTTTGTGTTTTGTGGCTTTCTCTGTATACTCTTGTCCGTGGAAACAATCTCAAGATTGAGTAATGAGAATGCTTATGGAAAACATAAACATGATCGGCAGGCAACCAGGATCTTGCCTTTCCTCTAGCCGCTGCACGTGAGGCCATGCAAGCTTTGAGTTTTGTTGTTCTGACTTTCCAGGCTTTAGCCTCAAATTAAGCACATGGATTTATTTGGTTTCATTTTGTATTATGAGGATTCATTGCTTTCTCTTCTTTTGTGTACTTTGAAATAATTAGTACTTCGCAATTTTGTGATCATTAGAAAGCCGTTTGCACAAGAAGATTTCACATATCATGAAATTCTAATTGTTGTGGATTTGTTTTTAT
Seq C2 exon
TTAGAAAGGTTGGATTTCAGATACCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002392:ENSBTAT00000003097:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]