BtaINT0021383 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002035 | ARL5C
Description
ADP-ribosylation factor-like 5C [Source:HGNC Symbol;Acc:HGNC:31111]
Coordinates
chr19:40321427-40322443:+
Coord C1 exon
chr19:40321427-40321507
Coord A exon
chr19:40321508-40322359
Coord C2 exon
chr19:40322360-40322443
Length
852 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
AACTTCCCTCTGCTGGCCAGTTC
3' ss Score
4.27
Exon sequences
Seq C1 exon
AAGACCCACTTCCTCATGTGGGACATAGGAGGACAGGAGTCTCTGAGCTCCACCTGGAGCACGTACTACTCCAACACTGAG
Seq A exon
GTAGGAGGCTGCCTGGGCTGGAGGAGCTGTGTGATATTAGCCAGTCACTTAACCTCTTTGAGCCTTGATTCCCCTATTGTGAGATGGAAACTGTAATAACGACCTCTCTGGGACTGCCCTAGCGGTCCAGCGTTTAAGACTCTGTGCTTCTATTGCAGGGGGTATGGGTTTGATCCCTGGTTGGGGAACTAAGAGCCCACATGCCGTGCAACTTGACCAAAGAATTTTTTTTTAAATGATCTCATGAGTTGTGAAAATTAAATGATTAAACAAGAGCTAATTCAGATGTGTTGAATACTTAATGCAGCACAATGCCTGTTAAAATTTTTGAATACTTCCTGGCAGCTTTGTCTGCTTGCTGGCAGCTTTCTGTTTGATGCATCGGATGGGGTAAGCTCTTTGTCTCTGGGGGCCTTACTTTCTCACTCTGGCAGCAGCAGAATCCAGTGGTTTCATTCCTGGAGTGAGAGCTGATTTCAAGCTCCAGCGCTACCACTCTTAGGCTGTATGGCTGAGGGCAAGATCGCCACATCACCTCACCGACCTTCAGTCTCCTAGTTTGTAAAAGGGGATAGTAACAGTTCCAGTTCCGCAAGGTTGTGGCGAGACCCAAGTGGAGTCACAACGCCCAGGACTTGGCATAACCTCTGGCACACAATCAGAAGTTGTGCTCTGTCCACCCTGGGTCTGGATAAAAAGGGAATTCATATGGGACTAGGGCAGTGAGGTCTTGAGACTGGACAGTTTGTTTTCTGTGGGGCTCACATCAAGGCAGAGTAAAGTGGGAAGAGACACATTCATGGGATGAATGAATGTGTGTGTCATCACTCACAACTTCCCTCTGCTGGCCAG
Seq C2 exon
TTCATCATCCTTGTGATTGACAGCACAGACCGGGACCGGCTGCTGACCACTCGAGAGGAGCTGTATAAGATGCTGGCCCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002035:ENSBTAT00000002636:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(15.3=100)
A:
NA
C2:
PF0002516=Arf=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development