BtaINT0023676 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004263 | ATP6V0A4
Description
ATPase, H+ transporting, lysosomal V0 subunit a4 [Source:HGNC Symbol;Acc:HGNC:866]
Coordinates
chr4:103223162-103226565:-
Coord C1 exon
chr4:103226408-103226565
Coord A exon
chr4:103223256-103226407
Coord C2 exon
chr4:103223162-103223255
Length
3152 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TTTCCTTTCACTCTCAATAGTAT
3' ss Score
8.94
Exon sequences
Seq C1 exon
ATTTGGAACACCTTCTTCCATGGGCGCTACCTCATCCTCCTCATGGGCATCTTCTCCATCTACACGGGCTTGATCTATAACGACTGCTTCGCCAAGTCTTTGAACATCTTTGGCTCTTCCTGGAGTGTCCAACCCATGTTCAGAAATGGCACGTGGAG
Seq A exon
GTAAGTTGGGACAGAGGTGGGTCACTCACTGGTCATCCAGGTGGACTCAGTGATCGTTCTCATGCCGGGGGCTTCTGTGCCTGGTTCTGTTCAGAGGTGCGCCCACCAATTGAACAAATAATTCAGTATTATCTGTTGAGTGTGAGACCTTGTATCACTTCCTCAGTTAACTGTGCTGGTCACTGTAATGCCTGGAAAGTTTTTTCAAAACTTCAGCCGTATTAAGTAGGTATCCTGGAGTGCATCCCACTCCCAGGCACTGTTGTGAAAACAAGCGTGGATCAGGTATAAACTGGGCATCAGAGTAGTAGTCGTGGAAGCAAGAAGACTTTGGGAGAAGAAGATGGCATTTTCTTGCTTGGCCTGGAATCGGAAAGAGAGTAAGAATACAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTTTCCAGGGAGTCTTCCCGACCCAGGGATTGAACCTGCATCTCCTGCACTGGCAGGCAGGTCTTTACCACTGAGCCACCAGGGAATAGGGGCTTCATACTGAGGCTGAAAAGCCTCAGGTGATGTTCCTCACGTCTTCCCCACAGATGCTTCAGTTCAGTCTCAGGTTTCTCTGTCTTGCCCTGGAGCGTCCAGGGGAAGTGACAGGAGAGCACTTCGAGAAAGGAGAGACAGACGCCTGACCGGGTGCACAGCCCTTCGCCCGTGTTTTCTCTCTCAAGCACAGTAGGACTTTCTATTGAAGGCATGTCAAGGGTCTTACCTGCTTGCCAACTGCATATTGTAAGTGGGGAGAGAGAAAACACCATCCATCTCATCCCAGGATTTCTTAGGAAAGATTCAACACAGGGTTCCTTTTGACGTGGAGCATCCCACGAGCGTGTGAGGGCTTGGTGCTGACTGAAGCGGGGCTCAGGAGGGCTATAGTAGTGCAGGGGTGTGTGTCACTGAGGCTCCGTGAATCTCCTTTTAGTCCCTCTGCTGGGTCCAAGTGCCCTGTAGTAGAGGACAGGAATGTTAATAAATAAATAAAAATGAAGAAGAAAGCATTTTGCAGGATTCCAATTACAGATGGCCATATCTATGGGTTGTTTTTTTTTTTCTTTGCAATTAGTATCCTGAAGAGATGCCTCGAAGAACAAAACTGTTATCCATTTGAAGACAGCTTGCTTAGTGCTGCTCTTCAGGTTTGCACTCATAAGCGTAGTGATGGGCTTGGAAATGTATTAAATTGGCAAAACTTTATCAAACCATGCACACACATTTTCATTTGCCCTGGAGTGTGCCTGGGAAAGGTCTGAGTCTGATGGTTGGCTGTCACTCTGCAAATGTGGGTCAGAATATTGTTCTTTTGTGTGCAGGCAAATGACCCCTGCCCCCAGTTCCAGGCCTTTGAGGCCATGCCAGACTGAGGCCCCAGGCTGGGTCCCACGCCCACACATGGATGGTATGAAGCAGACTTGCTTGAGCAGGGCGGTGAAGGGAAGCCACAGACATCCATAAGAGTGGCAGAGGACACAGCGGGGGGTTGTGGCCACTGGCTGCAAGCTGAGTCTTGGGCCTGCTTACCCTGACAGTGGGCTGGAGACACTGTCACAGCCTCCCTCACTGCGGACCGTGCACCACTCTCAGTAAGAGGCTATGAGAAGGGCTTCGAGGATTTGGCCTCAGGGAGGATAAGGGGAAGGATAGGTCATTTTTGTGGTTTGGACAGTGTCCTTATCTTGAAATGTCCATGTTTTGACATTAGATATGATTGTGGAATGGTCTTGTTTTTGTCTTGATCCACCACGGTCACCCTGTGGCCTTATCTGATGTTCCCTGAAATTGCTATGTTCAACAGCAGATACTATGGCTTGGCTGTGGGCACCAGGCCAATTTCCTCTTTTTGTTTTGTCACACAAACACATCTCTGATAGTGAAATCCAAGCATTTGCGCTGAGGTGTGCCTTTTGGACAGGGCTCTGGGTCTGAGATGGCCAGTCAGGCCCAGCTGCTTCCACTGTCACTGAGGGCCTGGTCAGCATAATCAGGCTTCCTGAACTCCCCTCACTGGGCTACAAATACCCCCACCACACTAGCTGCAGGAGGGAGGGAATGTATTTCTAGGCAGCCTAAGTTACCAACGTCCCGTTCTTCATCCTTTCAACTACTCAGTCTTGGGTCCCTCCATAGACATGTGCTCTTAAAAAAAAAAAAAAAAATTAAACCCTAATGTTCTGTCACGTTTGCACAGACAGTAAGAAGCTTCCGCTCATTGACATTTGTACTTCTAAGTGAGAAAGGGACACAGGTTTAAAAACAGTCAGTGGACCATAACTTTCAGGGGCTGAGGTTCCCAGAGGTCAGAGGCCACGTGTGGAAGCCAGTTCACTCCTCTGGGATCAGCTCTTGTGCCCCCAGGGGAGATTTCCCAGGCTGGTCCCAAGGCTGGATTTTATTTCTTCTATGCTTCCCCGGTTGCTCAGCTGGAAGAACCTGCCTGTCAATGCAGGAGACACTGGAGACGTGGGTTCAATTCCTGTGTCAGGAAGATCCCCTGGAGAAGGAAATGGCAACCCGCTCTAGCATTCTTGCCTGGGAAATCCCACGGACAGAGGAGCCTGTAGGCTACACTCCGTAGGGTCGCAAAGAGTCAGACACGGCTGAGTGTGCATGTACATATGCTCCTGTCACCCCTTCCCCCTGCCTCTTTTTTGATATAGGATAGTTTTTTCTTTACCTCATCAGGCTGATAGCCCTCGCGAAACTCAGACTGTGACCTCCTTGGGAGCCAGAGGGTAATTTCTGTAGCTTAGCACATAGTGGTTATTCAGTGAGTACACGTCACTCAGTCTCTTTGCGACCTCATGGATTGTAGCGGCCAGGCTTCTGTGTTCATGGGATTTTCTAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTCCTTCAGGGAATCTTCCCAACCCAAGGATCGAACCCTGGTCTCCTAGCATTGCAGGCAGAGTCTTTACTCCTTGAGTCACCAGGGAAGCATGGTTATTTGTTAATTGAATGAGCCAGTTGGTGAGTCACACCCACAGTTAGGCTTTGATTGGCTGCTTGCAAGTGGATGACTGATGTTCCTGTAGTATCTTTCCTACCTCTGGTTGATCGTTGGTTTTGTTTTTGTTTTTCCTTTCACTCTCAATAG
Seq C2 exon
TATGCAGGTATTGAAAACGAATCCACTGTTGCAGCTCGACCCAGCCGTTCCGGGAGTATACTCTGGAAATCCATACCCGTTTGGAATTGATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004263:ENSBTAT00000005588:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(6.5=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(3.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]