BtaINT0024987 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005676 | BAT8
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 2 (EHMT2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206263]
Coordinates
chr23:27288496-27288802:+
Coord C1 exon
chr23:27288496-27288611
Coord A exon
chr23:27288612-27288715
Coord C2 exon
chr23:27288716-27288802
Length
104 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
GTCCTCTCTCCCACCTTCAGGGT
3' ss Score
11.56
Exon sequences
Seq C1 exon
GATGGGCGGCTGCTCCAGGAATTTAACAAGATCGAGCCCCCGCTGATTTTTGAGTGTAACCAGGCATGTTCCTGCTGGAGAAACTGCAAGAACAGAGTAGTGCAGAGCGGCATCAA
Seq A exon
GTGAGTCCCTGCCCCTCGGCCCTCCTCACCCCGCTTTCTCCCTTCTCTCCTTTGGGAAGCTTCCATGTCACCCCCCTCAATACCGTCCTCTCTCCCACCTTCAG
Seq C2 exon
GGTGCGACTGCAGCTCTACCGAACAGCCAAGATGGGCTGGGGGGTCCGTGCCCTGCAGACCATTCCCCAGGGTACCTTCATTTGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005676:ENSBTAT00000007456:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=PD(29.2=79.5)
A:
NA
C2:
PF0085623=SET=PU(15.9=56.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGCTGCTCCAGGAATTTAA
R:
GCAAATGAAGGTACCCTGGGG
Band lengths:
196-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]