BtaINT0025281 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003245 | BCAR3
Description
Bos taurus breast cancer anti-estrogen resistance 3 (BCAR3), mRNA. [Source:RefSeq mRNA;Acc:NM_001024483]
Coordinates
chr3:50055412-50060357:+
Coord C1 exon
chr3:50055412-50055527
Coord A exon
chr3:50055528-50060185
Coord C2 exon
chr3:50060186-50060357
Length
4658 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GCTCATCTCCTTCCTTTCAGACA
3' ss Score
9.26
Exon sequences
Seq C1 exon
GTCGCGAGGATACTTGAAGTCTCGGAAGAGATGAGGAAGAACATGGGCGTGAACTCAGGGCTGGAGCTCATCACCTTGCCTTATGGTCACCAACTGCGCCTGGACATCATTGAAAG
Seq A exon
GTGAGTAGTGCTGCTCTGTACTTATGGTCCTTTCAACTCCATAGGCTGTCAGAGCTACAGTTTTCAGAGCTGGGAGACGCCAGGTACCCTCTGGCCCAGGGCCACCTCACTCGAGGAAGTGTGGCCCCTGAAGGCCTTTCCCAGAAGCCGTGACCAGAGAATTCCTGGAGAAGCTCAGGTGGCAAAGAGGAAGTCAGGGAACAGATAGCACGTTCGCAACTCTGCTCCATGGGCAGATGGAGAAGCCGGCAGAGGCTCAGCCCTAGAGCACAGGTCACCACCACCCCTGCTGGCCTGGGGTGGGGGCAGTGCTGCGGCAGATGGAGCGGGGGTGCCACGCCACTTCCCTCCAGCCTGAGCTGCAGCCCCTCTGTCTGCTTTAGGAATCAAGTGGGGGTTTGTGGGGGAAGTTGGGAAGAATAGGGTCTGAACGGTGTTTTCTTTGAAGTGTGGACAAATGGGGGATCAGAGGGCAAGAGATGAGGTGCTCAGGCCCGACCTCTAAAGCATCACTGCCCTCTTCTCGTGGAAAGCCAGGGCCCTGGCTGGCCATTAAAACCCACTCACATCAGATATTTAGAAACTAGAAAGGTAGAAGTAGCAAGGCACGTTTTTAAGCAGCACTAGACTAGAATCTCATGTTACCATAGAAGTTGGCCTTTTTGATACACATGAAAAGATAGTTGTTTTGGGTAAGACTGCTTTGTTATCTGAAGTTTTCTGTTTTTCCAACCAGCTTCCTGGTTGCCACAGCACTCGTGTGGTCTTTAGTGGGCAGCCAGGGCCCTGGCTTCTCCTGAGGAGAGGCGAGTGATGCTTCAGAAGCCGGAGCCCTAGCACCATCATCCCCTGCCCATGGTTTTCTGTGATGTTCTGGGTCACAGCGCTGTCCAGTACAACACTGATGGCAGAAATCTCCTGACAGCATCCACTGGCCGCTGGTGACCCCTGAGCACCTGAAATGTGGCAACTGAAGGATGAAATTTATTTTTACTCTTCAGCATTTTAAGTATAAATATAGCCACATGTGGTCTGTGGACAGTGCAGTCCTAGACTACCACTAGCCCCTAGAAAGTAAACACTATATTTCAAATGGCCTGGGAGAGTTGGTAGCAGCTGCTTTCAAGGTTACCCAACTATGAAGCAAATAAAATGGCTCCAGTGCCTCTGTTGCTGTGGTTTCACCGCCACAGGTGCCTCCCGTAGGAAACACCCAGCACCGAATGGAAGACTTCTGGGAGGCAGGAGGGCAGGACGCGAGCCTGCTGCCTTTGTTCAGGCATGCCTGTCAGCTTATTGTTCAGTGTCTTTGGGCAATGGTAGGTCTGACTTCTGAATTCCCCTACTTTCCCTGCTCACTCTTCTAGATGCCAGCCCTGCTCTCCAAGGCATCCTCTCCCTCCCCATGCCCCAGGGCCTGGCTTCTCATTTCCACTCGCCTGCCGTCCCTCCTGGTCTGGGCCCGTGGTCATTATTTCAGCAGAGACCAGCTGTGCTGCCGTGCATCCCTGTTTCTCCTGTGATACTTTTCAGACTGAAAGCTCCCCAGCTGCAGGCCTTGTTTATTTATTTATGGCGGAGCTGGGTCTTCGATGCCGTGCAGGCTTTCTCTAGTTGTGGCGAGCGGAGGCTGTTCTTCATTGCAGTGTGCGGGCTTCTCAATGCAGTGGCTTCTCTTGTTGCCGAGCACGGGCTCTAGAGCACAGGCTCAATAGCTGTGGCCCATGGGCTTTGTTGCTCTGGAACGTGTGGGATCCTCCCAGACCAGGGATCAAACTCATGATCCCTGCATTGGCAGGTGGATTCTTTACCACTGAGCCACCAGGGAAGCCCTGCAGGCCTTATTTTATCAGTTTCATGAGCTGTGTTGGGCATGCTTTATGGGTGCCCAGGCTGAGGTCAGCAGGCTTGTGGCTTCTCTCTGGGCTATTTTCTGACTTCCACTCTTGTCTACATCCATTTCCTCTTCCTCCTGATTGCCGCCTGCCTGGGGTCTGGCTCCTTGCTTTGTTCGCCATCCAGAGCTGACCTGTAGGATCTACCTGCTAGGGCCTGGGGAGTGGTTCTCTCCATTACAATGTATCTACTAAATTAAGGTTACAGCAGTCCTGCAGGATCAGGTGACAGCCTTGTGTTTGAGAGTCTAATGTAAACCACCCTCCATTTTAAACTTCAGTTCAGTCACCACCCATTCCAAGGCTAGTGAGTGGGATGTCCTTCTGAAATGTTTTGTGCCTCCTACCCACCTCAGGAGCTTCTGCTACACAATTGCCTTGCTGAGCTGTTTTTCCCAAGGCGGTGTGTGCAGGAGGTTTGAGGCAAATGTTGTTCGAATGAATGGATATAATTACCCAATTAACTGTTGATATAAAGCCAGTTCTTAAATAGAGAACCTGTCTTTTATTAAGGGCCTTAAAACATAGGAAAAAACATTGACTAAAGAATCAATTACGGCAACATAGGAAGTTAGTTTACTATTAAACAGCTAAAATGTTCATCTCAACCTTAACACTTTGCAAATGGGTAACAAAACTCTTCAATAAGTTTAACATAATAAAAATATACTTTAAGTCTATTTTTTTTTTTCAACAAAGCTAAATCTTTATTAGGATCATTTGAGAATCTGGCTTCAGCGTGGTTTAAACATTAACACATGACATGCACATTACAGACTTGAAGAGGTATTGGTCATACCTTGTCCTGACAGTAACATTTCAGACCCCTTTTATAGTCTGAAATTTCATTTTCTCTCATCTTCTTTGACCTCTCTATACAGATGCTCCCTCTGGGCTTCTGTTTCACCACAAACTCCTCATGTAACCTCTCCCTGCCTAGCCCCTCCTCAATCTCCTTTGCTTGCTGCTACCATCTTCCTTCTGCATGTTTTTTATTTTATTTTTTTTTTAATAACATAAACCTTTATTACATTCTTAGTGGATGTGATAATAAAATAATAACATATTTCACATAGTACTTCAGAGTTACAGTTATTTGATTTTTTTTTCTAATTTTATTTTATTTTTAAACTTTACATAATTGTATTAGTTTTGCCAAATATCAAAATGAATCCGCCACAGGTATACATGTGTTTAAGTCTATTTTAAAGATCCATTAATTAAGAAAGACAGGAAATTAGCAAAAGAAGATAAAGGGAAGAGATATAGGCAAAAGGGACCAACATACAGAGGGAGAAATGTGCACACAGATACCAGGGTAGTAACAACTGCTATTTGCTAGGTACTGCTGAGCCAGGCACTTTAATTATCTTTACGCACACACACAGTCTTTCTCACAACAGCCCTTGTTCCCATTTTAGAAGTGGAGCAGTGGAGCCTAAGGTCACGCTTTGAGCAACCACCTTGCACACCCACATGTGCAAATGCTCAGAGACAGCAGAGCCTGTTACTGATTTAAAAATCATTGGAGAAACTGGTAGTGCTAGCCACTAGATGAATCACTCCTCTCTTTGCTTTAGAAGAGTGAGGAGGAGGCCAGCACAGGAAGCGTGGAATATCATCCTTAGCTGTGAACTTCTAGGAAAAGGTGGCCCCAGAGTTTCAGAGGCAAGTCATATCGTAGCGACCGTAGCTGTGAATTAGTGCTTCACCTTCAGCACTCGTACCAGTGCCTGGAGAGAAATTTACCCAAGGCCACTCTGGTGGCTCAGCTGGTAAAGAATCCGCCTGCAATGCAGAAGACCTGAGTTTGATCCCTGGGTTGGGAAGATTCCCTGGAGAAGGGAACAGCTACCCACTCCAGTATTCTGGCCTGGAGAATTCCATGGACTGTATAGTCCATAGGTTCGCAAAGAGTCAGACATGACTGAGCAACTTTCACTTTCACTCTGGCCCAAGGTAGGGAATGCTCATTCCTGGGCCACAGAGGGAGGGAGAGGCAGGTTTACAGACTGCTGCCACCAGGGAGGAGACCTCTCTGTGACCCCATTCATATCCATCCCATTGTCTGTACAGAAAAGACCACTCTGCTTCGTCTTCTGGGTCTGCGCAGTTGACCCGTGGCATTCAGGATGAGAAAAGGGAGGATTGTTGGTAGATACAAGATTTCTTTCTATGAGGGTCTGACCTTACAGAGAAATCCTGCCAGCTCACTATTGAGTCTTTGTCCACATTCCCACTCACTTTCTGGCCCCTTGACCCAAGCCACTTTATTCTTAGCTCATCCCTTGTTCTCACATCCATGTTGTCTTCCTGGATCTAGCATATTATCTCATCTTTCTGTCCCTTCCATTCCCCAGTCCAGGGGGCTTAGGGACTTCCCAAAGGATTCCTCAGTGTGTTGGGGACCTGGCATCTCTGTGGACCTGTCATGGTGAGAGGGACAAGGAGCCACGTGCACTTCTGAGCAGCTTCAGCACAGGAAGGCCCCTTCATGCCCCTTGCTCCAGGGCTGAACATGCCATGTCCTGGGGTTTCTGTCCTTTTTGATTCTCCACAGGACGCCCACTGAGGCCCTTCTGCAGTCACTCTGATGGGGGTGGTCTGTCTTTGCAATCAGCAACCAAACTGTGTGAGCTGCCAGTGTGTCTCAGGAAGACAGTGGCAAATGGTGCACAGCCAGTCCTTTCCTTGGCCAGTTTGGTTTCATTTCCTCCTGGTCCTATTAGCCCTGGGCCTGATCGCTCATCTCCTTCCTTTCAG
Seq C2 exon
ACACAACACGATGGCCATCGGCATCGCAGTGGACATTCTGGGCTGCACGGGCAGTCTGGAGGACAGAGCAGCCACCCTCAATAAGATCATCCAGGTGGCAGTGGAGCTGAAAGACTCCATGGGGGACCTCTATTCTTTCTCAGCCATCATGAAGGCCTTGGAAATGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003245:ENSBTAT00000063777:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(19.1=100)
A:
NA
C2:
PF0061714=RasGEF=FE(28.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]