BtaINT0026334 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022590 | BOLA
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MWX3]
Coordinates
chr23:27863067-27863752:+
Coord C1 exon
chr23:27863067-27863161
Coord A exon
chr23:27863162-27863482
Coord C2 exon
chr23:27863483-27863752
Length
321 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
TCACCCCACCCCGCCCCCAGGCT
3' ss Score
8.8
Exon sequences
Seq C1 exon
AGTTTCTCCCCAGACCCTGAGGATACGGGTCATGGGGCCGCGAACCCTCCTCCTCTTGCTCTCGGGGGTCCTGGTCCTGACCGAGACCTGGGCCG
Seq A exon
GTGAGTGCGGGGTCGGGAGGGAACGGCCTCTGCGGGGAGGGGCGAGCGGACCGCCCGGGGGCCGGGGGTAGTGGGGTGGGCAGGACCCCCAGGGAAGGAGCCACGCCGCCGCCCTCGCCCAGACCCGTCCTCTCCCACCTGGTCCCGTCCTGTCCCTCCCCTGCTTCCCGCCCCTTTTCTCTCCCCCAAGAAGTCCGGGTCCTCCGACCTTTTCAGTCTCACGGGCCCCTAGCCCCCTCCCCACTCCCGGCCCCATCACCTCTGACCCGGGACCCGCTCCAGGACGAACATCGGGCCGGTCTCACCCCACCCCGCCCCCAG
Seq C2 exon
GCTCCCACTCCCTGAGCTATTTCAACACCGGAGTGTACCAGCCCGGCCTCGGGGAGCCGCGATTCTTTGCCGTCGGCTACGTGGACGACACGCAGTTCGCGCGGTTCGACAGCGACGCCCCGAATCCGAGAATGGAGCCGCGGGCGCCGTGGATGGAGCAGGAGGGCCCGGAATATTGGGAAGAGATGACACGAGATGCCAAGGAAAGTCAACAGAAATCCCGATTATGCTTGTACAACCTGCGCGGCTACTACAACCAGAGCGAGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022590:ENSBTAT00000035874:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.220
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(0.1=0.0)
A:
NA
C2:
PF0012913=MHC_I=PU(50.3=98.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGAGGATACGGGTCATG
R:
GGCCTCGCTCTGGTTGTAGTA
Band lengths:
351-672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]