BtaINT0026335 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022590 | BOLA
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MWX3]
Coordinates
chr23:27864854-27865355:+
Coord C1 exon
chr23:27864854-27865129
Coord A exon
chr23:27865130-27865244
Coord C2 exon
chr23:27865245-27865355
Length
115 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
CCCTTCCCTTTCTTCCACAGAAC
3' ss Score
13.08
Exon sequences
Seq C1 exon
ACCCTCCAAAGACACATGTGGCCCATCACCGCATCTCTGACCGTGAGGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTAAGGAGATCACACTGACCTGGCAGCAAGACGGGGAAGACCTGACTCAGGACATGGAGCTTGTGGAGACCAGGCCTTCAGGGGATGGAACCTTCCAGAAGTGGGCGGCCCTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACGTGCCGTGTGCAGCACGAGGGGCTTCAGGAGCCCCTCACCCTGAGATGGG
Seq A exon
GTAAGGAGGGGGTCGGAATGGAGCTTCCTCTCGGTAAAGCAGGAGCCCTTCTGGACATGTTCAGCAAGGTCAGGACTGAAGCCTGAAGTCTGGGCCCCTTCCCTTTCTTCCACAG
Seq C2 exon
AACCTCCTCAGCTCTCTGTCCTCATCAAGGGCATCATTGTTGGCCTGATTCTCCTCATGGTCACTGGAGCTGTGGTGACTGGAGCTGTGATTTGGAGGAAGAAGCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022590:ENSBTAT00000035874:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=91.4)
A:
NA
C2:
PF066236=MHC_I_C=PU(6.9=5.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGATCACACTGACCTGGC
R:
ACCATGAGGAGAATCAGGCCA
Band lengths:
253-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]