BtaINT0026370 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021077 | BOLA-DQB
Description
Bos taurus major histocompatibility complex, class II, DQ beta (BOLA-DQB), mRNA. [Source:RefSeq mRNA;Acc:NM_001012676]
Coordinates
chr23:25377153-25385064:+
Coord C1 exon
chr23:25377153-25377422
Coord A exon
chr23:25377423-25384782
Coord C2 exon
chr23:25384783-25385064
Length
7360 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CCTGTCTGTTCCTCCCTCAGTGG
3' ss Score
10.28
Exon sequences
Seq C1 exon
AGGATACCGTGGTCCACTTTATGTGCCAGTGTTACTTCACTAATGGCACGGAGCGGGTGCGGTACGTGACCAGATACATCTACAACCAGGAGGAGACCGCATACTATGACAGCGACGTGGGAGAGTACCGGGCTGTGACCCAACTAGGGCGGACTTTGGCTGAGTATTGGAACAGCCAGAAAGATATCCTGGAGCAGACACGGGCGGAGCTGGACACGGTGTGCAGACACAATTACCAGCTGGAGGTCATCACGTCCTTGCAGCGCCAAG
Seq A exon
GTGAGTGCCTGCCTGCCCTCTGATGGATCGGCCCTCCACCCCAGATTCCGAGCGGGGAGAGGGTGAGGGTCCACCAGGGTGGGATCCCCAGGTTCATGGAGGGGACAGCCAGGCAGGGTGTCCCACACAGTGGTCCCACCCTGGTGGCCTGGTCCTAGGCTGTTGTCTCAACTACGCACCATCCGCCCCGCCTCGTGCCTTCAGTGTGTTTACTTTCTGAAGTTTGACAGCTCTGCCTGGTTAGGGCTGCTCCATGGCTCAGGGCACCCTGCACACATGATGATAAATTACAGCATGAAAGAATATATTTTCACTTTTTGGTTTCAAATCATTATTTGTCTCAACCCTTCTTTCTTAAATGGATATCACTATATCACTTGTCCTGCATCTCTTTCAGCCAAGGGGCTGTCTTTATTATCACAGTATGCCTGGTACCTGACACCTGGGCAGGTAGTATGAGCTCCATAAACCTTTGTTAAATCAATAAATAAGTGTACTTGGTTGCCCATCCACTTAAGCTTAGGAGAAAACAGAAAGGTAGGGCCTTACAAACTGACTTTATTAGTTACTCTTTACTATTTTGCTTAACCCTTTAAAGTAAACTCAGTGATTTGGATCTTAACAATTTAGATTTTGTGAATGCAAAGTTTGAGGGGGAAAGTGCTTGCTAAAATTAAAAATACTTGAATGATGTAAGGGAGAGTTTTAATTTCTTAGAAAAGCTCAACAAATGGCATAATAGAGCTGAAGTTTGGGAGTAAATCAGTTGATGACATTCAATTTTTGATTAAAAATTATTTCAGGTTTCTTTTGGCCTCAGTTCAGTTCAGTTCAGTCACTCAGTCATGTCTGACTCTTTGCGACCCCATGGACTACAGCACACCAGGCCTCCCTGTCCATCACCAACTCCTGGAGTTTACTCAAACTCATATCCATTGAGTTAGTGATACCATCCAACCATCACATCCTCTGTCATCCCCTTCTCCACCCGCCTTCAATCTTTCCCAGTATCAAGGTCTTTTCCAATGAGTCAGTTCTTCAAATCAGGTGGCCAAAGTATTGGAGTTTCCAGCTTTAACATCAGTCCTTCCAGTGAATATTCAGGACTGATTTCCTGTAGGATGGACTGGTTGGATCTCCCTGTAGTCCAAGGGATTCTCAAGAGTCTTCTTCAACACCACAGTTCAAAAGCATCAATTCTTCGGCGCTCAGCTTTCTTTATAGTCCAACTCTCACATCCATGCATGACTACTGGAAAAACCAAGGAGTAAGTGTTTTTTTTAATTTCATGGCTGCAGTCCCCATCTACAGTGATTTTGGGGCCCCCAAAATAGTCTGCCACTGTTACCACTGTTTCCCCATCTATTTGCCATGAAGTGATGGGACTGGATGCCATGATATTAGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTGTCCTCTTTTACTTTCATCAAGAGGCTCTTTAGTTTTCCTTCGCTTTCTGCCATAAGGGTGGTGTCATCTTTTGGCCTAAACCTTGCCTATCCTCTCTCCCCTGTCCCTTTCCCCTAATTATCACCATCCATGTCAGAGGTAGATATTCTGAAAGCTAATTACACCCATCTGATGAGCACCTATTTGTGGACAGTTATCTTACCAAATATTATCTATATTATGTCACTTAATTTCACAATTATCCTGTGTTTTGGAAGTTAACACCACTGCTTCGTACATGCATAATGAACAGTTTCAGTTTTTCACTGTTCTGAAGCCTACTCCAAATACACAACAGTCATCATATTCTTTACAACATGTAAAGTTTAATGGAAGCAAAGCCTCTTTAAAGCTAGTTGTGACAAGAAGTAGCAATATCAGTCTGTTCCTGCCTATTTTCAGTGTTGGTGGGATGAAATGATACATTCAATGGATAGAAAACTCACTGATTAACCCTTAGTCTGACCCCAGTATTATCTCTACATGTTTATATAACTTTTAGCTTACTTTGCAGTCTCTCCATCCTTCTTCATCCTAATGCCACCAAGTATATACAATTATTTTTCATAAAATTATTCTAATATTGCTTTCTTGAACTTGTGACCTCCGTTTTCATTTCCAGTTTGTTTGAGATGAACAGATTTTATAAGTCCTCAAAACTGACCGTGACTTCAGTCAGAGTCCAGGAAGGAGAACCTGAAAGTGAAAGTGCTGGTCGCTCAGTCATGTCTGATTCTTTGTGACCCCATGGACTGTAGCCCACCAGGCTGCTCTCTTCATGGAATTCTCCAGGCAAGAATATTGGAGTGGATAGCCATTCCCTTCTCCAGGGGATCTTCCCAATATAGGGATCAAACCTGGTCTCCTGCATTGCAGGCAGATTCTTTATTGTCTGAGCCACCAGGGAAACACTATGGAGAACCTGACAAATAGTTAAAAGTTCAAATTAAAAACATGATTCTTTCCAGGTGATGGGTCATGAATGCCATGCTATTGGGGTGACAAGACTGTCTGCTGACCTCAGCAAGTCCCAGTTATGCTTTTTGTTCACATGGCACACTCGCTAACTCAGGCCAACTTCTGTAAGATTCTCAGAATATTTTCTATAGAGAATAAATGTGATAATAATGTTTTATTTCAGAACAAAACCATTATTCTAAATAGCAAGGGGATGAAGTAGGGTTAGCAACTAGTAGTTAAACTCATTTGAATGTCAAAAGAAAATTAGGAGAAAAAGGAAAATGAGAATACATAATGATATATTATCAAATAAAATATATACAGGAAATATTTACTATAGTTTCATACTTAGGGAATGAGGGATATGTGGCAAAATGGATGCAGAGATAAAGGGTAAGATGTGTGAAATAGGTCAGGAGGTGTATTGTATTTGACCATGAGTAGCAATCTTAGAGGATAAAGGAATTGAGGCAGAGACAAGCATATTTTATCAGTATTGTTCTCAAGGTTTCCTTTATTTTCCTTCAGAAATTGCAAATTTTGAAATAGCATTTCTTTTTTTTTTTTTTGTCTCTGTTACTAGATTGCAAGTGCTGTAAATGCAAGGCTACAGTCTATTGTTTGTCTTTGTATCCCCAGTGCTTGTCAAATTTTCATTTGCTGAATCAATGAACAAATGAATCAATGAATAAATAAAATATAGGTACATGTATAATGTGGAGTTAGAAATTTATGCATTTAATAATATAAAATTTTGTGGCGAGTTCTCTGTATTATGGCTTCTGAACTAAAGTTAGGCTAAAAGCTGAGAGAGATGCTTTGTTGACTAGCAACATGTGAGGAGTGCTCTTGCTAGCAAATTCTGTATTAAAAGTATGTAATAATTCTGTATTACAGAGGATTATAGATATAGCCTGTTTGAGAAACTTGGCTTTGTAGGAAGGATGGTCACTGTTCTATTTTTATTGGACATAGAAATGCCTATACATTCTTAATTCTCAGTCCATGTTACTATTCATGGGGACATAACTAGTGTTGACATAACTATAGCCAGCAGGTGGGAATCAAAACAGCTGGATTTTCTCTTGGGGAGAACTGGGGCTAATTGGAAACAGTGTCACTATCCTAGCATGAGTCACCAGAGCTGATCCTGATGGTTCCCATCAATAGCTGGGTGGTACGGGGAGGACAAGTCCAGGCTTAATATTTTTATTAAAAAATTTTTGTGAATAGTGGCCTGTATAGAAATTTGTTGTTCTTTTAGTCTCTAAGTCCTGTCTGATTCTTTTGTGATCCCATGGACTGTAGCCCACCAGGCTCCTCTGTTCATGGGATTTCCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCCAAGGGGTCTTCCCAAACCAGGGATTGAACTAGTGTCAATCCACATTAGCAGGTGGATTCTTTACCACTGAATTGCCAGGGAAGTTCTCTGTATAAGGTAATTGTTGTTATGTGGCTAAGTCATATCTGACTCCTTGCAGCTCCATGGGCAGCAGCAGACCAAGCTTCCCTGTCTTTCACTGTCTCTCAGAGTTTGCCCAAACTCATGTCCACTGAGTTGGTTATACTGCCTAACCATCTCATCCTTTGCTGCCCCCTTTTCCTCTTGCCTTCAATCTTTCCCAGCATCAGGATCTTTTCCAGTGAGTTGACTCTGCCCATCAGGTGGCCAAAGTACTAGAGCTTCAGCTTCAGCATCAGTTATTCCAATGAATATTCAGGGATAATTTCCTTTAGGATTGATTTGTTTGATCTCCTTGCAGTTGAAGGGACTCTCAAGAGTCTTCTTCAACACCACAGTTCGAAAGCTTCAATTCTTTAGCTCTCAGTCTTCTTTACGGTCCAACTCTCACATTCGTACATGACTACTGGAAAAACCATAGTTTTGACTATATGAATCATTGTCGGCAAAGTGAAGTCTCTGCTTTTTAATACTCTGTCTAGGTTTGTTGTAGCTTTCCCTCCAAGGAGTAAGAGTCTTTTAATTTCATGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCCAGAAAAATAAAATCTGTCACTGTTGCCACTTTCCCTATCTATTTGCCATGAAGTGATGGCACCAGATGCCTTTATCTTAGTTTTCTGAATGTTGAGCTTTAGGCAAGCTTTTTACTCTCCTCTTTCACCCTCATTAAAGGCTCTTTAGTTCCTCTTCACTTTCTGCCATTAGACTGATATTATCTACATATCTGAGATTGTTTATATTTCTCTCAGCAATATTAATTTCAGCTTGTGATTCATCCAGCCCAGCATTTCACATGATGTACTCTGCATAGGAGTTAAATAATCAGGGTAATGATATACAGCCTTGTCATACTCTTTTCCCAATTTTGAAATACTCTGTTGTTCCATGTCTGGTTTTAACTGTTGTTTCTTGACTTGCATACCGGTTTCTCAGGAGATGGGTAAGGTTGTCCATCTTTCCATCTCTTTAAGAATTTTCCACAGTTTGTTGTAATCCACGCACACAGTCAAAGGCTTTAGTGTAGTCAATGAAGCAGAAGTAGATTTTTTTTGGAGTTCTCTTGCTTTCTCCATGATCCAGAGAATGTTGAAAATTTGATCTCTAGTTCCTCTGCCTTTTCCAAATCCAGCTTGAACATCTGGCAGTTCTTGGTTCACATACTACTAAAGCCTAGCTTGAAGGATTTTGAGCATAACCTTGATAACATGTGAAATAAGCACAATTATTTGGTAGGCTGATCATTCTTTGGCATTGCCCTTATTTGGGATTGGAATGAAAACTAACCTTTTCCAGTCCTGTGGCCACTGCTGAGTTTTCCAAATTTACTGGCATATTGAGTGCAGCACTTTAACGGCATCATCTTTCAGGATTTGAAATAGTTCAGCTGGAATTCCATCACTTTCACTAGCTTTGTTTGCAGTAATGCTTCCTAAGGCCCATTTTACTTCACACTCCAGTATGTCTGGCTTTAGGTGAGTGACCACATCATCATGGTTATCCGGGTCATTAAGACCTCTTAAGTATAGTTCTTCTGTGTATTCATCCTGCTTCTTAATCTCTTCTACTTCTGTTAGATCTTTACTGTTTCTGTCTTTTATTGTGCCATCCTTGCATGAAATGTTCTCTCGTTATCTCCAATTTTCTCTTCTTTCCCAGTTCATTATTTACCTTTATTTCTTTGCATTATTCACTTAAGAAGACCTTCTTATCTCTCCTTGTTATTCTCTGGAACTCTGCATTCAGTTGGGTATATCTTTCCTTTCCCCCCTTGCCCTACTTTCTCTTCTTTTCTCAGTTATTTGTGAAGCCTCCTCAAATAACCACTTTACTTTCTTGCATTTCTTTTTCTTTGGTGTGATTTTGGTTACTGCCTTCTATACAGTGTTATGAACCTTCATCTGTAATTCTTTCAGGCACTGTTTCTACCAGATCTAATCCCTTGAATCTATTTGTCACCTCCACTGTATAATCATAAGTATTTGATTTATGTCATACCTGAATTGGACTTCCTTGATGGCTCAGATGGTAAAGAATCCACCTACATTGCAGAAGACCTGAGTTTGATCCCTGGGGTGGGAAGATCCCCTGGAGGGGGGCATGGCAACCCACTCTAGTATTCTTGTCTGGAGAATCCCCATGGACAGAAGGGCCTGGCAGACTACAAACATGAGGCTGCAAAGAGTTGGACATGACTGACCTACTAAGCACATACCTAAATGGCTTAGTGATTTTCCCTACTTTCTTCAATTTTAGCCTGAATTTTGCAATAGGAGCTAATTATCTGAGCCACTTTCAGCTCCAGGTGTTTTTGCTGACTGTACACAGCTTCTCCATCCTTAGCTGCAAAGAATATAATCAATCTGATTTCAGTATTGACCATCTTGTGATGTCAATGTGTAGAGTTGTCTCTTGTATTGTTGGAAGAGGGTGTTTGCTATGACCAGTGTGTTCTCTTGGCAAAACTGTTAGCCTTTGCTCTGCTTCATTTTGTACTCCAAGGCCAAACTTGTCTGTTACTCCACATATCTCTTGACTTCCTACTTTTGCATTCTAGTCCCCTATGATGAATAAGACATCTTTTTTGGAGTGTTAGTTCTAGAAGGTCTTACGAGTCTTCATAGAACTGGTCAACTTCAGCTTCTTGGGCATTGGTGGTTGGCGCATAGACTTGGGTAACTATGACGTTGAATGGTTTGTCTTGGAAATGAACCATGATCATTCTGTCATTTTTGAGATTACACCCAAGTACTGCACTTCAGACTATTTTGTGGACTATGAGGGCTACTTTAGTTCTTCTAAGGGATTCTTGCCCACAGTAGTAGACATATAATGATCATCTGAATTAAATTCACCAGTTCTTACCTACTTTTTAAATAGTTTACTGATTCCTAAGATGATGGTGATGGACAGGGAGGCCTGGTGTGCTGAGATTCATGGGGTCGTAAAGAGTCGGACACGACTGAGCGACTGAACTGAACTGAACTGAACTGAAGCTGTTGATGTTCACTCTTGTATCTCCTGCTTCATCACATCCAATTTACCTTGATTCATGGATCTAGCATTCCAGATTCCTATGCAATATTGTTTTTTACAACATCAGACTGTACCTATACAGTGTAAATATAGCAATTTATAATTTTTAAATACTTCATTTTTATCAATTAATATACACAGAATAGCTCTCATAGAATGATTAGAATTATCTCTTGAGATTCTGAAAAGTAAACTGACTAATTTGTTTATTCAAGCAAATAAAGTGGCCAATAAATCCAAGACTTGTAATCTAGGAATCTTTCCACTCTAGAACCAAGGAAGGTCTCTTCCCTATGAGGAGATGTGCTGTGTGGTCTCACATCTCACTGTGTCTTTTCCTGTCTGTTCCTCCCTCAG
Seq C2 exon
TGGAACCTACAGTGACCATCTCCCTGTCCAGAACAGAGGCTCTAAACCACCACAACCTGCTGGTCTGCTCCGTGACGGATTTCTATCCAGGCCAGATCAAGGTTCGGTGGTTCCAGAATGGCAAGGAAGAGACAGCCGGCATTGTGTCCACCCCTCTTATTAGGAATGGGGACTGGACATTCCAGATCCTCGTGATGCTGGAAATGACCCCCAAGCGAGGAGATGTCTACACCTGCCGCGTGGAGCACCCCAGCCTCCAAAGCCCCATCTCGGTGGAGTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021077:ENSBTAT00000046279:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0096914=MHC_II_beta=WD(100=82.4)
A:
NA
C2:
PF0765410=C1-set=WD(100=87.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]