BtaINT0026378 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013919 | BOLA-DRB3
Description
Bos taurus major histocompatibility complex, class II, DRB3 (BOLA-DRB3), mRNA. [Source:RefSeq mRNA;Acc:NM_001012680]
Coordinates
chr23:25472161-25474883:+
Coord C1 exon
chr23:25472161-25472430
Coord A exon
chr23:25472431-25474601
Coord C2 exon
chr23:25474602-25474883
Length
2171 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTCCACCTTTTCTCTCCTAGTGG
3' ss Score
8.45
Exon sequences
Seq C1 exon
CACATTTCCTGGAGTATTATAAGAGAGAGTGTCATTTCTTCAACGGGACCGAGCGGGTGCGGTTCCTGGACAGATACTTCCATAATGGAGAAGAGTACGTGCGCTTCGACAGCGACTGGGGCGAGTACCGGGCGGTGACCGAGCTGGGGCAGCGGGTCGCCGAGTACTGCAACAGCCAGAAGGACTTCCTGGAGCGGGCGCGGGCCGCGGTGGACACGTACTGCAGACACAACTACGGGGTCGGTGAGAGTTTCACTGTGCAGCGGCGAG
Seq A exon
GTGAGCGCGGGGGTGGACGGCCAGTGTGGAGCAGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGTGAGTGGGAGAGAGAGAGAGACAGAGACAGACAGACAGAAACAGAGATCCTTCACTCACTCTGGGTCGAGTGTGTACGACTGTGAGTGGGTACAAGTTATAGGGTTCCTGTGAGAGCCTGTTGTCAGCAGACACTGTGATTTTGTCAATGCGTGACTGTGAGACGGGAGAGACAGAGAGAGACAGGGCCAGAGACAGAGGTAGACTGAGTCCAGGGTAAGTATTAAGATGTAGGATGTGAGCAAGTAGAAGTTGGGGTTCCTGTGAGAGTCTGTTGTTGGAGAGACAGTGTGTGAATTGTCCGTGACTGTTGAGGGGAGTGTGTGTGTGTGAAGTGGGACGAAGAGAAGAGTGTGTGTGATGGGAACAGTGCCCTGGGGTCTGAGTGGGCCTGGAGGGAGGGAAGGTGTTAGGGAGGGATACAGGAGGGAGGTTAAGAATTTGTCCATTTCTTCCAGGTTGTCCATTTTATTGGTGTATGGTTGCTTGTACTAGTCTCTTATGATCCTTTGCATTTTGTGGTGTCTGTTGTAACTTCTTTCTTGTTTTCTAATTTTACTGATTTAACTCCTCTCTCCCCCCCTTTTTTTTTCTTGATTGAATCTGGCCACAAGTTTATTAATTTTACTTATCTTCTCAAGAATCAGCTTTCAATTTCATTGACCTTTGCTATTGTTTTCTTCATCTCTATCTCATTTATTTCTGTTCTGATCTTTATGATTTCTTTCCTTCCACTAACTTTGCATTTTGTTTGTTCTTCTTTCTCTAAAGTTGTAAGGCTAGGTTGTTTATTTGGGATCTTTCTTGTTTATGAGTTAAGATTGTACTGCTATAAACTTCCCTCTTAGAAACACTCTTGCTGTGTCCCACAGGCTGTGGATTGTTGCATTTGCCTTGTCATTTGTTTCTAGGTATTTTTTTATTTCTTCTTTAATTTCTTCATTAATCCATTGATTATTCAGTAGCATACTGTTTAGCCTCCATGTGTTTGTGTTTTTTACAGTTTTTTTTTTTTCCTGTAATTGATTTCTAATCTTACAGTGTTGTGGTTGGAAAAGATGCTTTAGAGTAATCTTAAATCTTTCATCTTATGATATTGTAAAAATGTCTTTTCCTCAGATTTCATTTTTTTATTGAACCCGTTAGCTTTAGGGATTATATCAGGCACTTAGCATACATATTAATGAGTCTCCCATCCTCTCTTGAACTCAAATATGAGCTTAAAAAGAAAGAAGAATGTAAAATAATAATAGTTCCAATAGTAAGTATGCTTGTTTTGCAAAGGAGATGGGTTGCAAAGGAGATCAGTGGTATGTAATAATTTACATACATTTAAAAAAAATTAATGGCTTTTCCTCTCCTTCAGGACTCACCCTTTTCTTGAGATTTAACTCACAGAGTACAATCACATTCATCTTTCATAGGGTAGAACCATTTCTGAGATATTCTAAGATATGAGTGCCTTGAGAGAGCTTTCCCAGGATTTCATCCTTTCTCTCCACACCTATCTTACTGCTTTCCCCCAATTTATCCACATGGCTTTGAATTAAACAAGGATAATAATAGCTAACATATATTATAGGGTAAATTCCTGTTATTGTGTTACATACTTTAGATATATTAATCATCACTAATGAATGCTAAGAGATAAGTTAGTACTATTATCCTTCTTTATAGATGAGAAAGTCAAGACACAGAGGAATGTAAAAATTCTCCCAGGGTCAATCAGTAAGAAGTAGAACCTGGATTTGAACCCAGGCAGTCTGGCTTCAGAAATTATGCTTTTAATTAATATGCTATATGCCTTGCAAAGATGTGTAACACTTTAATTCAACAATGAATAACTATTTCACTGCATGAGAAAACACACATTTTCTTAACATCTTTCAAACTAATGGTTCGGTGTGTAAATGTTAAAGATAAAGCTCATGGCACTAATTCCTCACTGGGCCAGCTATGAGGGAGGCCTACCCAAGGCTGCAGTCTGGAACTTTAGAGTGGGGGCTGAAAGGCAGCTAACCAAGGAGATTTACTCTGTTGTCCTCACTGATTCCCTCCACCTTTTCTCTCCTAG
Seq C2 exon
TGGAGCCTATAGTGACTGTGTATCCTGCAAAGACCCAGCCCCTGCAGCACCACAACCTCCTGGTCTGCTCTGTGAACGGTTTCTACCCAGGCCACATTGAAGTCAGGTGGTTCCGGAATGGCCATGAAGAGGAGGCTGGGGTGATCTCCACAGGCCTGATCCAGAATGGAGACTGGACCTTCCAGACCATGGTGATGCTTGAAACAGTTCCTCAGAGTGGAGAGGTCTACACCTGCCAAGTGGAGCACCCCAGCCGGACAAGCCCTATCACAGTGGAATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013919:ENSBTAT00000018484:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.074
Domain overlap (PFAM):
C1:
PF0096914=MHC_II_beta=WD(100=82.4)
A:
NA
C2:
PF0765410=C1-set=PU(90.5=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]