BtaINT0026719 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011074 | BRD2
Description
Bos taurus bromodomain containing 2 (BRD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001045866]
Coordinates
chr23:7243464-7243897:+
Coord C1 exon
chr23:7243464-7243602
Coord A exon
chr23:7243603-7243682
Coord C2 exon
chr23:7243683-7243897
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
ACTCTTTTTCTGCCCTCCAGCGC
3' ss Score
9.61
Exon sequences
Seq C1 exon
CCCACTGATGATATTGTCCTGATGGCACAAACGCTGGAAAAGATCTTTCTGCAGAAAGTGGCATCAATGCCACAAGAAGAACAAGAACTTGTGGTTACTATCCCTAAGAACAGCCACAAGAAAGGGGCCAAATTGGCAG
Seq A exon
GTAGGAAGAGAAGGAGTTTTGCTAATAGAGACCAAAAGATGGGAATGAAAATCAGACTAAACTCTTTTTCTGCCCTCCAG
Seq C2 exon
CGCTCCAGGGTAGTATCACCAGTGCCCACCAGGTGCCTGCCGTCTCTTCTGTGTCTCACACTGCCCTGTATACGCCACCACCTGAGATACCTACCACTGTCCTCAACATTCCCCACCCGTCGGTCATCTCTTCTCCCCTTCTCAAGTCCTTGCACTCCGCTGGACCCCCACTCCTTGCTGTCTCTGCAGCTCCCCCAGCACAGCCCCTTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011074:ENSBTAT00000014704:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.191 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PD(11.8=21.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACAAACGCTGGAAAAGA
R:
TGAGACACAGAAGAGACGGCA
Band lengths:
175-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]