BtaINT0027627 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013763 | C10orf82
Description
chromosome 10 open reading frame 82 [Source:HGNC Symbol;Acc:HGNC:28500]
Coordinates
chr26:37386435-37388502:-
Coord C1 exon
chr26:37388284-37388502
Coord A exon
chr26:37386622-37388283
Coord C2 exon
chr26:37386435-37386621
Length
1662 bp
Sequences
Splice sites
5' ss Seq
TGGGTACTG
5' ss Score
2.97
3' ss Seq
GCATGACATCTTTTTCACAGAAT
3' ss Score
5.77
Exon sequences
Seq C1 exon
GCTTCGTGCCCTACCTGAGCTGCCAGGGCACCTCCAGCGAGGACAACATGGCCAACTGTCTGAAAATCTTCCAGGAGAACACACGGCGGTGTAAAGACCAGCTGGAGGAATTCCACTGCTCTGTGGCCACTGCCCCAAAACTGAAACCTGTCCGCTCGGAAGGGACGGTCCTGCGGACACTGCACCAGTATTACCGGCAGTACCATCCCTTAAGTCTGG
Seq A exon
GTACTGGCTTCTGGACACTGGCTCCCCCTTCACCCTGGGCCCCATTGCAGGGCCTGACTGGCTCACTGAGCAGCCACCAAGAGTACCGTTCCAGATCCCCAGGCGTCTATGCAAAGTGGAGAGGCTCAGTTGCTTAAAAGGAGAAAGAAACATATCCAGGGGGAGAGGGAGACAGCTGGAGAAGAGGGTTCTGGTACTCAGCTCCCTGGGTGGTCATCACGGAGGTTCAGAGAGCAGCTGTGGTCTCAGTGTGCATGTGTGCTAAGTCGCTTCAGTCGTGTCCGACTCTGACCCTAGGGACTGTAGCCCACCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAAAAAATACTGGAGCGCATCACCACGCCCTCCTCCAGGGGATCTTCCTGATCCAGGGATTGAATCCACATCTCTCATGTCTCCTGTATTGGCAGGCGAGTTCTCTACCACTACTGCCACCTGGGAAGCCCCTGTGGTCTCAGTAGTTATGGCTTTTTAGTTGCTTTCTCTGTGCCCAGCATCGTTATTTCATTAACCACCCATGACAGCCATATGAAGTCGATACTATTATTCCCACTTGAGCATAGTGTCCCTTGTCTGAGGTCAGACTTGGGGTTTGAACCCAGCTCCTCCAGGTGCTAGCTGGGCAGGAAGGGGTTTTGCACTGAATAACAACCATAATAATAGTGAAAAAAAACAGCTGATGATATGACTGTATAATGTTAATCATCAAAACAGTGATTTATCCTAGCTGGTTTTTAAGGTCTAACACCCAACAGGAAAAGTAAAGGACTGATTACCTTTATTATTATTACTGTAACTGGGGACTTTTCAATACATGGTAACTCACATGTTTGTCATGCTTTGGAAATTTCCCAGCCATTTATAAGAAGCACCAGCCTAAGAGTTTGGGCTTTAGCCCAGCTCTGTGACTCTTTGCTGTGTGACGTAGGGCAGGTGACTTCCCATCTCTGGGCTACAGTTCCTTCATCTAAGGCAGGGAAGGATGGACTAGACACTCCCTATGGTGCCTTCCAACTCTGAGGTTCTGGGACTCTCTGGTCTAATTCAATTCTTACAGCAACTGGAGGAGACAGAGGGCAGGCAGTTATCTTTCATCTCACAAATGTAAAATTGCAGAAGGTCAGCCCACCAGGCGGCCAGAGCTAGGTGTGATGTGCTTTTTCCTGACCTACATGCTTCTCTTGATTCCCTTAGTTAAATCATCAAGGAGCATCAAATGCCTGAAGCTTTTGTGTTGTTGTTAGTCTGAGAAAAGAGTGGGATCCGTTTAAGAGCAATAATGGGAATCAGAGAAACGCGGGTCTAAATCCTGGCCCTGTCACTCCCTTGCTCTGTGACTCGGCCAAGATTCTCTTCACCTCTCTGAGGTCTCAATGTCCTGCTCCATGAAAGTGTTGGTGATAATAGCACCGACTTCTTAGAGTTTATAAGACAATGAGATGAGAGAGAGAGCCTATGTAAATCCCCACCAAACGCAGACACACAGAATAAACCAACCAGTGGTAGCTGTCCTCATCACATCTCAGGGCCTAGGGCTCTCCCCAGGGCTGATTGTTGGGATGCTGATTGGCTTGGGAGTGCCGCCCACTGGATGGCTTCTCAAAGCCCTCAAGGAAGCATGACATCTTTTTCACAG
Seq C2 exon
AATGCAAGAATATAAAGAAACCTCTCCATGAGCCCCCTATCCCCGGCTGGGCAGGCTACCTGCCGAGAGCCAGGGTCACTGAATTAGGCTGCTCCACGCGGTACACCGTCATGGCCAGAAACTGCTACAGGGACTTCCTGGACCTCATGGAGCGGGCCAAACAAGCACACCTGAAACCATATGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013763:ENSBTAT00000018285:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGTGCCCTACCTGAGCT
R:
GTCCCTGTAGCAGTTTCTGGC
Band lengths:
352-2014
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]