BtaINT0029703 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012485 | C9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr11:99325626-99326121:-
Coord C1 exon
chr11:99326076-99326121
Coord A exon
chr11:99325752-99326075
Coord C2 exon
chr11:99325626-99325751
Length
324 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
CCAATTGTCCTCTTATCCAGAAA
3' ss Score
6.85
Exon sequences
Seq C1 exon
GGTGAACATGGCCAAAGAGTAGAGTGGCGGAAGTGGAAGCAACAGA
Seq A exon
GTAAGTCAGGGACTAGGGGGTGGAGGTGGGCCCTGGCGGGGGTGGGCCCAATGGAGAGCTAAGTGTCTGTGCTTACCTCCCCACCGCCCATCAGTGCACAGCTGAATCTTGGGGAAAAGCCACCAGGTTTGTCCCCTCTAGGTCTTACTAGTACCCAAAATGGGGACGAGGAGGCCAGAAGCCCTGGAAGGCTTCTCTGGCTGCTCTCTAGGCAGCATTGGGGTCCCCAGGCTGACCTACTGAGAGGACACCACCTCCTGGGCTGTTCCAAGTCTTTCCCACCTCCAAGTCACTCTTCCCTCCACCAATTGTCCTCTTATCCAG
Seq C2 exon
AAAAAGAGGAGAAAAAGAAGTGGAAGGATCTCAAGATGACAAAGAAACTGGAGCGGCAGCGAGCGCAGGAGGAACAGGCAAAGCGCCAACAGGAGGAAGAGGCAGCTGCCCAGAGCGAGGATCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012485:ENSBTAT00000016565:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.837
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development