BtaINT0029704 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012485 | C9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr11:99322537-99325751:-
Coord C1 exon
chr11:99325626-99325751
Coord A exon
chr11:99322697-99325625
Coord C2 exon
chr11:99322537-99322696
Length
2929 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
3' ss Seq
AACACCCTTGTCCTCCCCAGGGC
3' ss Score
9.8
Exon sequences
Seq C1 exon
AAAAAGAGGAGAAAAAGAAGTGGAAGGATCTCAAGATGACAAAGAAACTGGAGCGGCAGCGAGCGCAGGAGGAACAGGCAAAGCGCCAACAGGAGGAAGAGGCAGCTGCCCAGAGCGAGGATCGGG
Seq A exon
GTGAGCGAGCCGGGTCCTGGGCAGGGCAGAGAAGGGCGGAAGGGCCCTTAGGGGCCACTGGGCCCAGACATCTTGTCCTGATGGAGAAACTGAGGCTTGGAAAATGGGAGGGACCCAAAAAGCTGAGCCCTAACCTCCTACTTAGGTGGATTTCAGTTCTCTGGAGGGTAAGTGTCATATATCATAACTTGTAGAACCTCATCATTGTAATGGCTGATTATACTTTTTTTTAAGCTCCTTTAGCCAGACTTTATTGTTTGAATATTTGCAACTGCTATTCTATACACAAATTTTAATTTCTTACAAAACTGTATATTCCATATTGCTAGGTCACTTCACTCTCCATTTTTATGCCACATTTCCATCCAGATCTATTTCCCCAAATCACAATCTGCCTGTTGGTGTGTTGTCTTATTTAGTTGCTGAGTTGTGTCTGACTCTTTGCGACCCCATGGCCTGTAGTCTACCAGGCTCCTCTGTCCATGGGATTCTCCAGACAAGGATACTGGAGTGGGTTGCCATTTCCTTCTCCAGGGGATCCAGGTTTTGAACCTGGGTCTCTTGCATTACAGGCAGATTCTTTACCACCTGAGCCACGAGGGAAGCCCCCAGCTGTTAACACCCACTTCTATCCAGGGAAAGAAGTATATAGATACAGTTTTACAGAAGTGAGGCTGCTTAATCCATGCACTTCTGGACCTGGTTTTTCTAATCCCACATTGTGTCCTTCTGTACATCTGCATCTACCCTAACAAATTGTATCTTTCCTGCTTGGTCAGCCCCAGAATTCTGGAGTATTCAGTTCAGTTGCTCAGTCGTGTCCGACTCTTTGCAACCCCATGAACTGCAGCACTCCAGGCCTCCCTGTCCATCACCAACTCCTGGAGTCTACCCAAACCCATGTCCATCGAGTTGGTGGTGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCTCAATCTTTCCCAGCATCAGGGTCTTTTCCAATGAGTCAGCTCTTCGCATCAGGTGACTAAAGTATTGGAGTTTCAGCTTCAGCATCAGTCCTTCCAATGAACACCCAAGACTAATCTCCTTTAGGATAGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCAAACACCACAGTTCAAAAGAATCAATTCTTTGGCGTTCAGCTTTCTTTATAGTTCAACTCTCACATCCGTACATGACCACTGGAAAGACCATAGCCTTGACTAGAGGAACCTTTGTTGGCAAAGTAATATGTCTGCTTTTTAATATGCTGTCTAGGTTGGTCATAACTTTCCTTCAAAGGAGTAAGCGTCTTTTAATTTGATGGCTGCAATCACCATGTGCAGTGATTTTGGAGCCCAGAAAAATAAAGTCAGCCATTGTTTCCACTGTTTCCCATCTATTTGCCATGAAGTGATGGGACCAGATAGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTCCTCTTTCACTTTCATCAAGAGGCTCTTTAGTTCTTCTTCACTTTCTCCCTCAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCGGGCAATCTTGATTCCAGCTTGTGCTTCCTCCAGCCCAGTGTTTCTCATGATGTACTCTGCATATAAGTTAAATAAGCAGGGTGACAATATACAGCCTTGACATACTCCTTTTCCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCTGACCTGCATACAGGTTTCTCAAGAGGCAGGTCAGGTAGTCTGGTATTCCCATCTCTTTCAGAATTTTCCACAGTTGATTGTGATCCACACAGTCAAAGGCTTTGGCATAGTCAATAAAGCAGAAATAGATGTTTTTCTGGAACTCTCTTGCTTTTTCGATGATCTAGCGGATGTTGGCAAATTCTCTCTGGTTCGTCTGCCTTTTCTAAAACCATCCTGAACATCTGGAAGTTCACGTTCACGTATTGCTGAAGCCTGGCTTGGAGAATTTTAACCATTACTTTGCTAGTGTGTGAGATGAGTGCAATTGTGTGGGAGTTTGAGCTGTTTGGCATTGCCTTTCTTTGGGATTGGAATGAAAACTGGCCTTTTCCAGTCCTTTGGCCCCCGCCGATTTCACGGGTGTTTTTAGTCGGGAGTATTAGGGGCCTTATTTTACTCTGTAAGCCCAGTGGTTGTTAGTGGTGGTGGTGACAGCAGGGACAGAAGCTGAGCACGTCTGCTTTCTCAGACACCAGGAAAGCCCTTTATCTCATGTGGCTCCCTTTGGACGGTTCTGGGAGCACAAGTGTGGTACTTTCTCTGAAGTCAGCTGTTCTGCCTTTTTTGTGACCTTGGGTCATGATTTGACTTCTTTAGGCTAAAGGTTCCCTGACTGTCTGTGGGGATCATGGTAGTACCTACTTCCTAGGGTTATTGGTTAAGTTTATACCCATAAAAGGCACTAAGAATTATTATTATTATTTTTTAATTTTGGGGAGGCTGCTCTGCAACATGTAGGATCTTAATTCCCCAACCAGGGATTGAACCCATGCCCCTTGCATTAGCAGCACAGAATTTTAACCACTGGACCACTGGGGATGTCCAGTAAGAATAAATACTCTCATTATTATCCGATTTTGATGCCTGGAGAACTGAGGCAGTAGGGGGCAGAGGATGTGAATATAGGTCAATGCCTCTAACCACTCCCTGTCATAGCTAGTGGTACATCCTGTTTATGGGAGCTCTGGAGACCCCCAAGTTCATTTTCTTCCTGGGGAGATTGAGATCTATGCTACTTATTTCAAAAATCCTCCCAGTAAGAAAACTTTCTAACTCTAGGCCCTAGGATTAGAGGAAGGGAGGGGAGAGATGGCCCTGGCTGCTCCAGCTGACCATGAACACCCTTGTCCTCCCCAG
Seq C2 exon
GGCGGCACTACACCCTGAGCGTGGCTCTGCCAGGCTCTATCCTGGACAATGCCCAGTCACCGGAGCTTCGCACCTACCTGGCCGGCCAGATCGCCAGAGCCTGCGCCATCTTCTGTGTGGATGAGATCGTGGTGTTCGATGAAGAAGGCCAAGATGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012485:ENSBTAT00000016565:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.837 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0259812=Methyltrn_RNA_3=PU(16.7=90.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development