BtaINT0030558 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021808 | CACNB3
Description
Bos taurus calcium channel, voltage-dependent, beta 3 subunit (CACNB3), mRNA. [Source:RefSeq mRNA;Acc:NM_174509]
Coordinates
chr5:31120057-31120396:-
Coord C1 exon
chr5:31120316-31120396
Coord A exon
chr5:31120116-31120315
Coord C2 exon
chr5:31120057-31120115
Length
200 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CTCCCCCCACCCCAACCCAGGTC
3' ss Score
6.46
Exon sequences
Seq C1 exon
GCGGAACATATTCCTCCATATGACGTGGTACCCTCCATGCGGCCTGTGGTGCTGGTGGGACCCTCTCTGAAAGGTTATGAG
Seq A exon
GTGAGAGGTCCCTGACCCCAGAGTTGTTTCTACCAAACTTGCCACAAAAACAGTGGGAGGGGATGTTCCCTATGCCCATCCGTCAAGGTCTGTGTGGAGGGGGTGAGCTCCATGGCCGTACCTGGGGATGCTGCCCATCTCCAAGAAGGCTCCAGTCAATTACACGCCTTTCCCTTCACCCTCCCCCCACCCCAACCCAG
Seq C2 exon
GTCACAGACATGATGCAGAAGGCGCTCTTCGACTTCCTCAAACATAGGTTTGATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021808:ENSBTAT00000029069:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PU(8.3=55.6)
A:
NA
C2:
PF0062516=Guanylate_kin=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]