BtaINT0031395 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005034 | CAPN5
Description
calpain 5 [Source:HGNC Symbol;Acc:HGNC:1482]
Coordinates
chr15:57306732-57308192:+
Coord C1 exon
chr15:57306732-57306854
Coord A exon
chr15:57306855-57307995
Coord C2 exon
chr15:57307996-57308192
Length
1141 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
AGCGCTTCCGCCCCTGGCAGGTG
3' ss Score
8.88
Exon sequences
Seq C1 exon
TACATCTTTGATGTCAAAAAGCCCGAAGATGAAGTGCTGATTTCCATCCAGCAGCGGCCAAAACAGTCCACCCGCCGGGACGGCAAGGGTGAAAATCTAGCCATTGGCTTTGACATCTACAAG
Seq A exon
GTGAGGCCAGCTGCGGCTCTGCTCTGGGTGAGGAGAGTCTGAGCTGCCTGGGCCTGGGAGAGAACATTCTGGAACATTTTGGTCTCCGACCTCACCGTGTCACCCTGGACACGTTGGCTGATGCCCTGGGCATGCTGTGACATGGGTCCTGTTTCAGTCTCCACAGACGCCCAGCCTGCCTTGCATTGGCCTCATGGGAACTTGCAGCCTGACTTCTTGCTGCCCCAGAACCACAGGCTGTCTGGACAGAAAAGGGGAGGATTGCTGGCGTTCGGGGCTGGGCTCTGGGAGGCCCCACGCTGCTCCCTCCCTCAGGGCTCTGGTCCCACTGAGTCGGAGGCCTTGCTGGGCACTGGGAGGAGGCTTCCTGGGCAGAGCCAGGTGGGGTTCCCACCGGCCACTCCCTGGCCCGGGGCCCCAAGACGTTCCACATGTTGTGATGCCCTGTGTTATGATGACATTCTGCATAGAGGGACAGTGTGGGCCTGCCAGACACCAAGAACCCAGTGAAACCACGTGTACCTGCTAAGGCCATGGCCTGAGCTGAGGCCCTGGCCTTTGGTATGCTGGGTCGTATTATGACAGTTTGTTCATGTCAGTGTGTTGGGACACTCACTGTGTGCTAATATTGTGACTTTGACGTGGCATGACCTTTGCTGATGTGACTGCATGGTGCATATTCCAAGAATGAAATGGTCTAGCATATCCTGTTAGCCGGTGATGTCATTTCTGGACACATGCTGTGACCTGGACAGACAGTGCTTCTTGGTTCTGTTATGATGTCAGAAACCCCACGGACATTGTCACCAGGGGGATTCCCATTGCCACTGCCTCCCACCCCAACAGCTTCATGAGATATAATTCACAGACCACGTGATTCACTCATAGAGTTGTACGGCCATCACCACATTCAACTTTAAGACACTTTCATCACCTCCAAAAGAAACCTCATGCCCTTTAGTCGACGTTACCCAATGTCATCCACCTGGCCCCCCCACCGCTCCCCCAGCCCTAGGCAGAGGCTGGTCTACTTCTGACTGTAGATTTGCCTAGTCTGGTCATCAAGTGGGGGCAGAGTTGAGAGATGCAGGGTGGGATGAGAGGGGGGCTCTGTGAGACCCAGCGCTTCCGCCCCTGGCAG
Seq C2 exon
GTGGAGGAGAACCGCCAGTACCGCATGCACAGCCTGCAGCACAGGGCCGCCAGCTCCATCTACATCAACTCCCGCAGCGTCTTCCTGCGCACGGAGCAGCCCGAGGGCCGCTACGTCATCATCCCCACCACCTTCGAGCCAGGCCACACTGGCGAGTTCCTGCTCCGAGTCTTCACTGACGTGCCCTCCAACTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005034:ENSBTAT00000006638:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.341 A=NA C2=0.045
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(27.8=100)
A:
NA
C2:
PF0106717=Calpain_III=FE(45.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTGATGTCAAAAAGCCCGA
R:
AGTTGGAGGGCACGTCAGT
Band lengths:
312-1453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development