BtaINT0031404 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005034 | CAPN5
Description
calpain 5 [Source:HGNC Symbol;Acc:HGNC:1482]
Coordinates
chr15:57303516-57304460:+
Coord C1 exon
chr15:57303516-57303709
Coord A exon
chr15:57303710-57304382
Coord C2 exon
chr15:57304383-57304460
Length
673 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGG
5' ss Score
5.78
3' ss Seq
TCCCTGTGCTCACATCCCAGCTC
3' ss Score
5.91
Exon sequences
Seq C1 exon
GCAGTGACAGCCGCAGACATGGAGGCCCGGCTGGCGTGTGGCCTGGTGAAGGGCCACGCGTACGCCATCACGGATGTGCGCAAGGTGCGCCTGGGCCACGGCCTGCTGGCCTTCTTCAAGTCGGAGAAGCTGGACATGATCCGCCTGCGCAACCCCTGGGGCGAGCGGGAGTGGAACGGGCCCTGGAGCGACAC
Seq A exon
GTGAGGCCCGGGGCGGGGCAGTGGGTGCGGCGGTGAAAGGGGAAGCACAGGGCAGGCACCAGGTGGGTGGGCTGAGCGCCGGGGGCTTGGGCAAGGCCATGGCGGGCTTCCTGGAGGAGGTGGCGCCAGGGCTGGGGCCTTGAAGGATTTGCAGGGAGGATGGCATTAGGAGAAGACTGTCTTTGGAGGGGGTTGTGGGGTGGATTCAGTGTGGGTGGAGGTCTGGAGGTAGGGAGGAGCTGATTCCTTAGGGGATGTAGAGACCCCTCCGGTGCAAGAGTGAGGAAAGCAGGAAGGGAGGCCACCAGGAGTGGGAATGGGAGCGACTGCCCTGTGCTTGGCTCATGGCCCTGGTGAGGCCAGGAGAGGAGTGGAGCCCAGACCCCCACTGAAGGAGCTCCCTTCATTGAGAGTCAGCTCCCCCTTCTCCCCGAGCCTGAAGCTTGGCTCCCAGACCCCCCAGGTCCTGGCAGCCCACCGTTACCTGCAAGAGTGGGCAGAGAAGGCTTCTTGGAGAGGGGCTGGGCATGGCCCTGTGCCCCCGACCATCCCCACACTGATGGAGGCCTGTTGCTGAGCCATCCCTCATGCCTCCTGTCCCTTGCCAGGGTGGCTCTGCTGGGGTTCCTCCTCTGATCCTCTCCCCTCTTGCCTCCCTGTGCTCACATCCCAG
Seq C2 exon
CTCAGAGGAGTGGCAGAAGGTGAGCAAGAGTGAGCGGGAGAAGTTGGGTGTGACCGTGCAGGATGACGGCGAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005034:ENSBTAT00000006638:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(20.1=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGACAGCCGCAGACATG
R:
CAGAACTCGCCGTCATCCTG
Band lengths:
271-944
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development