BtaINT0032775 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009341 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:HGNC:29296]
Coordinates
chr4:44185779-44188054:-
Coord C1 exon
chr4:44187878-44188054
Coord A exon
chr4:44185853-44187877
Coord C2 exon
chr4:44185779-44185852
Length
2025 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
3' ss Seq
CGGCCCCATTTCTTTACTAGGAT
3' ss Score
9.1
Exon sequences
Seq C1 exon
GAAATGGAGAAGAAGATGAGACTATTGAGAGAAAGCACTGAAGAATTACGTAAGGAAGTAATGCAGAAGAAATTAGAAATTAAAAATTTACGGGAAGATTTGACATCTAAGCAAAAGCAATTACTAAAGGAGCAGAAGGAGCTAGAAGAACTGCTTGAGTATCAGGTCACCTTAAAG
Seq A exon
GTGTGCTGCTTCACTCGCACATATGTAAACACTGATCTGCAAGGACATAAAAACGCATGGGTGTCATTACACTTTTTGCATTGACTACATAGGTTTGACAAAAACCCAGACACACAAACTGAAATGTTATGCAGTTGTGATTGATCCTATCAGACTAAACCTGGGCTCTGGGGATTCACAAAAGATTTTTGAATATTCAGTAGCATCACTCTAAGTTGGAGCTCTGACTGGGAGAAAAGGTCTCTCTAGACCTCGTCAAGCATTTTCCAATATTAGAAAGCAGTGTCACAAACACAATCACTTCCTTCAAGAGCAACCAAATGTCCTAACCTCTTTACATATTGTTACTACTTTATCCTTGTCTGCCTGTTTGATTCCACTTCACTTCCCTCTCACTGTGAACATTATACAAGACCCACATTTATGTTTTCAGTTCAGTTCAGTCTCTCAGTCGTGCCTGACTCTTTCCTAAAACATATTTGTGTTTTAAGAAATAATTAAAATTCATTTCATTTTGAAATATTTTGCAACAGGTCTTGAAACAATTTAAGTAACCAGAGTTATTTTTTAAAGCAACACATCTGAGATGCCTTGGCTTAGAATTAGGATTCACTCTGACCTCCTTAAGAGATGAAGCAGTCAGCCGAGACATATCCAGCTGCCACCTAGAACATGGACACTGAGCCAAGATGGATTTACAAGGAACCCAGTGAAGCTAAAGCTTCAGCCCCTCACATGCGTTAAGCGCCTCCAAGGCCCTGAACCTAATTTAGCATTTGTAACTTGTGATTCTTTCTCTTAAAAAGAACTGTACAGTCCCAAACTGTACAAGTTTTAGCCTCACAAAATTTAGATCTGCTCAAGACTGAGCAAGACCCCAGAAATATACCACACTGCAGGGATGTCTTCAAGCCCCTGTGCTACCCCAGGACCCAAAGTCCAGCATGATCCTCAGGTGGGAAGGGGCTCTTTCACAACCCCTGCCATGTATGTACATACCATTCTTCAGGCTATAAGTGAATCTTCTGTGAATCCACAGAGCATAGTGCAAAGCGGTGTTAGACAAAGTTAGCTTCTGATCTTGGCCTTGCTGCTTAGAAGTTATGTGACTTTGGGAAAATCATTTACCTTCTCTTAGCCTCAGCCTTAGAGATTAAGATGCATATTCAGGGAGGTAAAGCTCTAAGGAGAATCCGATAGGTGAGTGAGGGAAACAGGACAGAGCGGAAGAAGTCAGGCCAAAATATGATTTCAGGAGACCCCTAGTTTCAATCTGATCCCATGGGAAACTCAGATCATGAATCGCACCACAGAAGGTGTTCCACCCTGAGTCAGGGGTGGGCTGCTGTACCTCCACATCAGTCACAGCCTGTGCCCCTCTTCCTTCCATCCCCCTACCCACCCACCCGCCGCCAAGGCAACTCTGCACAGCCATGGCGCTCTGTGGAGAGAACAAGCATAAGCTGTTGCTGCTGCTGCTGCTAAGTTGCTTCAGTCGTGTCCGACTCTGTGCGACCCCATAGACAGCAGCCCACCAGGCTCTGCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCATTGCGTGAAAGTGAAAAGTGAAAGTGAAGTCGCCCAGTTGCGACCGACTGGTGGTGACACCATGGACTGTAGCCCACCAGGCTCCTCCATCCATGGGATTTTCTAGGCAAGAGTACTGGAGTGGCTTGCCATTGCCTTCTCCAGCCTTCAAAACCTCTGAGGGATGGGTGTATCTCCATAAAGAGAACCTGGGCAGAGCACCCACACCATTCGCTACTGTCAGTTAGCTCCTCTTTCAAATGGTAACCACGACCATCTGAAAGGTCATTATGAGAATTAAATGGAATAATTAAAGCACACTGCAGGGTACAGGACAGATAATAAAAATTCTACACCTTGTAGCTCCTTTCTCTCTCTATTTAATTTGCTTAACTGCTTCTCATCTAAGAGTACATAATTTAACACGGCCCCATTTCTTTACTAG
Seq C2 exon
GATGAAGTGGTCCACCATCAATCCATCCCTGTACAAATTGGAAAAGAGATAGAAAAAACAACACGCAAAAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009341:ENSBTAT00000047247:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.153 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]