BtaINT0034621 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018367 | CD6
Description
CD6 molecule [Source:HGNC Symbol;Acc:HGNC:1691]
Coordinates
chr29:37935604-37936165:+
Coord C1 exon
chr29:37935604-37935675
Coord A exon
chr29:37935676-37935898
Coord C2 exon
chr29:37935899-37936165
Length
223 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ATCACCATTCTCTTTTTCAGGCC
3' ss Score
10.52
Exon sequences
Seq C1 exon
ATTCCCAGCGGCACCGCTTCACAGAGGAGGAGGCCCAGCAGAACAGGTTCCAGATGCCCCCACTGGAGGAAG
Seq A exon
GTGAGTCAGCCTGGGGAGGCATGTGGAGGGAGGGAGGTGACTAGGATTCCAGCACTGCCTCCAGACCTAGCAGCTCACTCACTTCGAGAAGCATCGGTGCAATCTCCCTCAACAGGTCCTTCCTGACTTTAACCAATTCCCATTGGCAGTAAGTTCTTTCTCAGGTCTAACTTAAAGCCCTCTTACTGCACTGCATCTTCTTGATCACCATTCTCTTTTTCAG
Seq C2 exon
GCCCAGGACTGGAAGAGGTGCATGCCTCCGAGGTCCCACCTGCCAACCTTGAACACTGCATTGCAAACCCTCCCTCCCTGGACCCTCCTCCTCCACATCCTCCAAGGAGCAAAAGCAGCTCCAGCACATCTTCGGGGGAGATGTACTGTAATAGCCCCAGCAGCAAGCGACCTCTGTGGAGCTCTCAAGTGTTTTCATCAGAGAGGAACCCCCTCCTGGAGCAGCCCCCCAACTTGGAGCTGGCTGGCTCCCAGGCAACTATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018367:ENSBTAT00000047026:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.944
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACAGGTTCCAGATGCCC
R:
CTGGAATAGTTGCCTGGGAGC
Band lengths:
301-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]