BtaINT0034627 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018367 | CD6
Description
CD6 molecule [Source:HGNC Symbol;Acc:HGNC:1691]
Coordinates
chr29:37927652-37929496:+
Coord C1 exon
chr29:37927652-37927954
Coord A exon
chr29:37927955-37929430
Coord C2 exon
chr29:37929431-37929496
Length
1476 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
TGAGCGGTGCTTTCTAACAGGTG
3' ss Score
8.65
Exon sequences
Seq C1 exon
AGCACCAGTCCTGGCGCCTGACCGGGGGCACTGACCCCTGTGAGGGGCAGGTGGAGGTGTACTTCCGAGGGGTCTGGAACACAGTGTGTGACAGTGAGTGGTACGACTCAGAGGCCAACGTGCTCTGCCAGGACTTGGGCTGTGGGACCGTGGCCCGGGTGCCCAAGGGGCTGCCCCACTCCTTGTCGGGCAAGATGTTCTACTCATGCAAGGGAAAGGAGTCCACCCTCTCCAAATGCTTCTGGCGGTTCAACAACTCCAACCTCTGCAGACAGTCCCAGGCAGCCAGGGTCCTCTGCTCAG
Seq A exon
GTACCCCTCCTCCTCCTCCCCACTCCACTGTCCCATCCCCAGGAATTCCATCTGAATCCACAACCTAAGAACTTGTAGCCCAAGGACCAGAGGTTGGGCTAGATTAGGAATGACAAATACTGGCATAAGAGGGACCATGGCCCTTACCGTGCCCAGGGTACACGGTATTGATCAGGTATTCTTTTCCCCAGATCCTTGTCACAGCCCCAGAATCATGAATCCAATCTTTATTAAGGCATTATTATATATGAAGCAGTGTTCCCTAGTGACTGGAGTTGGCTCAGGAAACAAAATCAATTTGCTATCCTTGGGCTGGTGATCACTGTAAAAAGAAAAATTAGAAGACACTAATAATAGGGCTACAGTGTCTGGAGCCCTAATCAGGTGCCAGGCATTCCTTGGGACTTGGTATGATTTCAGCAAAGCCTCCTACCTGCTCTATGAATTGGGTTTCACCGAGTCTAAGATGGCATTGATCATAAGTCACACTGTTATTGGGCTTCCCTGGTAGCTCAGCTGGTAAAGAATCCTGCAATGCAGGAGACCCCGGTTCAATTCCTGAGTCAGGAAGATCCACTGGATAAGGGATAGGCTACCCATCCAGTATTCTTGGGCTTCCCTGGTGGCTCAGCTGATAAAGAATCTGCCTGCAATGCGGGAGACCTAGGTTTGATTCCTGGGTTGGGAAGCCATCCCCTGGAGAAGGGAATGGCTACCCACTCCAGTATTCTGGCCTGGAAAATTCCATGGACTAGTCCATGGGGTCCCAAAGAGTTGGATGTGACTGAAAAACTTTCACTTTCACAGTTATTCCTTTATGCACCATCGGGGACAAAAACGCTGCCAAAATAAACTCTTGATATGCCATCAATTGAATTGATTGATATTACCACCCCTAATTTCCGAGGTGTTAAAATGTGAAGAAGTAAAAGCATTAGACTTGAACAAACACAGTGTCAGCATCTCTGTGGAGTTCAGACACCAGGCTATGAATTCCGGCTCTGCTGATTACCAGCTGGGAGGCTTCCTTCATGAATATGCAGATGTTGATACCAGGCATTTCACAGAGTAGCTAGGAAATCAGGCAGTATCCACTATGGAATGTGGTAAGCCCCCTCCCTTACCAGTCAAATGATTATGATAATGATGAGACTGTCAGCTTCCCACTTCTTGAGGCAGGTGTGAAGAACAAACTCAATACAAGATGGAAAGGGGAAATATTTGGGTTCTCTAGCAGATTGTACAGAAGGAAGGGCTAATTCTTTCATTAGCTCTTTATTTTAACCAAAGAATCATCCTTGCATTTAATCCATCAGATCCTCTTTATTGTGGGGTGTGGGACTCAGCATGTGCCCCGGTGGGAACACGCCCCCAGTTTCAGGCCACTTGTCTGTCCTGTCCACTTTCTAGCACAAAGCCCAGCCACCCAGGTGTTTGGGTGCATGTGCTGAGTGAATGAGCGGTGCTTTCTAACAG
Seq C2 exon
GTGCCCGGAGTCTGCTCAATCTGTCCATTACTGAAGTCCCTGCAAGTGGTCAGCCGGTCACTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018367:ENSBTAT00000047026:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.2)
A:
NA
C2:
PF151021=TMEM154=PU(22.8=91.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCCTGGCGCCTGACC
R:
GACCACTTGCAGGGACTTCAG
Band lengths:
349-1825
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]