BtaINT0034630 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018367 | CD6
Description
CD6 molecule [Source:HGNC Symbol;Acc:HGNC:1691]
Coordinates
chr29:37932585-37934027:+
Coord C1 exon
chr29:37932585-37932680
Coord A exon
chr29:37932681-37933904
Coord C2 exon
chr29:37933905-37934027
Length
1224 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
CAACTCTGTTCTCTCCCCAGTTC
3' ss Score
10.21
Exon sequences
Seq C1 exon
CCCTCCCCGCTGTGGTAAACCACCAGCACTCACCCACCACCACCCCGGCAGGGATGGAAAACTATCAAGAGGTCCCCATCACCATTGCCAAAGAAG
Seq A exon
GTAGGATGTCGCCTGTCCTGGGGTTGGGGAGGGCAGGGGAGGTCAAAAAGGGAATACTTTTTGGAGGGTCAGTACTGCTTAGGTCAAAGCAGTGCCCCAGCTGGAGAAGAGACCTGGGCCAGCCCACGCATGCTCACGGGACCTTGAACAAGTCTAGCCTCAGTCTGGGCCTCAGTGGGCAGATGACTTTCCAGTGCACTCATTCTAGAGCTCTAGGCTTTTGAATTCTGGACCAAAACAGGCCCAAGGCATTTTGGACCTTAGTTCTCAAGGAGAGCTCTGTTCTGCTAATTGGCCAGTAGGTTTGTGACATCATCACCTCTTCTAACAGTCTGCCCAGAATCAGCCTGTCTGCAGAGCCCCATCAAAGTTTTCCTGGAACATAAATGTATTTCATATTTTCCAAATAAAAAAAGGAATCAGTCATCCATCTTTAATGATATACTGATGTATATCTCTTCAAAGTCTTGTGAAGGCATTCGAGTTTAATCCCACGGTGTTATGAAAGTATTAAATCACCTTTATTTGAAAGAGTTCGATGACACAAAACCAATACAAAACTCAGAGAAATATTATAAAGATTCTTTGCACACAGGATCCATATATTTGAGAAGAGAACATGAACACAGAACCTAGCACAAGGGTAAGCTCAGAGCAGCCACTCACTGAATATCATGGTGTAGAGATTAAGAGCCCACACTGCCTCTTCTCTGGGCTATGTGAGACTCTCTCTGTGCCTCAGTTTCCCCAGCTGTAAAATGGGGACCCTAACGTAGCTGCCTCACAGAGTTATTATGAGCACTAAATGAGATAATATTGGGTTGACCAAAAAGTTCATTAGGGTTTTTTCCCATAAGATCTCCTGCATTGGCAGGCAAATTCTTTACCACTGAGCCACCTGGGAAGCCCTCTGTAAGATCTTATGGAAGAACCTGGATGAACTTTTTGGACATCCCAATATTTGTAAATGTTGGAATAGTGCCTGGCCTGTAGTGACTACTATGTGTTTGTTAAATTAAAAAAAAATTGTTATTTAGTTTCCTGTGTTTGAAATGGATGGGGGGAGCTTAGACAACCCAGGCCTGACAGTCTTGCACAAGGTGGGCTGCCTGGCATGCTCCCCGCCCCTCCGTCTCTGGTCCTCACCATCCATGCTGCCTGCCGCCTCTCTCTGCTCCTTTCTGTGCTCTGCCTTGCTATGCCTCAACTCTGTTCTCTCCCCAG
Seq C2 exon
TTCCCAAGCTGCCCATCCAGGTCCAGGCCCCGCCCCCCGAAGACTCGAATTCCAGCTCGGACTCAGACTATGAGCACTATGACTTCAGAACCCAGCCTCCTGTGGCCCTGACCACCTTCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018367:ENSBTAT00000047026:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.515 A=NA C2=0.690
Domain overlap (PFAM):
C1:
PF151021=TMEM154=PD(25.0=69.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCGCTGTGGTAAACCA
R:
GTAGAAGGTGGTCAGGGCCA
Band lengths:
216-1440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]