BtaINT0035081 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009736 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr29:43688408-43688763:-
Coord C1 exon
chr29:43688671-43688763
Coord A exon
chr29:43688533-43688670
Coord C2 exon
chr29:43688408-43688532
Length
138 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGTG
5' ss Score
0.25
3' ss Seq
CCCTTCTCCACACCCTCTAGACC
3' ss Score
7.89
Exon sequences
Seq C1 exon
CTGCAAGCTCAGGTGGCCGCCCTGAAGCGAGAGGTGACTCAGCTCCAGAGACAGCGGGAACGAAGCCCAGAGAAGGCGTCTCCCCAGGTCAAG
Seq A exon
GTGGTGAGGCCTTACCTTCTCCCCAGTGCCATTTCTCTTATCCTGACCCCATTCAGGGTCTGTCAGGGCCAGGCCCCAGGGGTAGACTAGGTCATGGCATCTTGGACCCCTGCCCTGACCCTTCTCCACACCCTCTAG
Seq C2 exon
ACCTTCCACACCGCCTCTGAGACCAACGGCACAGGGTCACCTGAGGGTGGCAGGCCCCAGGAGACACAGCTGAAGCAGGAGGTGGCCGCACTGCGTCCACAGCTGGAGCAGGCCCACGGCCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009736:ENSBTAT00000034021:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAAGCTCAGGTGGCC
R:
CTGCTCCAGCTGTGGACG
Band lengths:
204-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]