BtaINT0035092 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009736 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr29:43685753-43686264:-
Coord C1 exon
chr29:43686159-43686264
Coord A exon
chr29:43685887-43686158
Coord C2 exon
chr29:43685753-43685886
Length
272 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
3' ss Seq
GGCTCCTCCTTTCCCCACAGTTT
3' ss Score
10.27
Exon sequences
Seq C1 exon
CCCGGCTCACACACTCTGCGTCCCTGGAGCTTCCCATCCCCCACTAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACG
Seq A exon
GTGAGACCCTCAGCCCCCCAGCTCACCATCCTCCCCTGCGCCAGCCACAGCCCCCGGGTTGGGGGAGGGGAAGCAGCCCCCATCCTGCCACATCAGGCGCCCCCCCACCCCCGTCAACATTTCCCACTGCTCAGTTTTTTCTTCTCTCTCTTTACTGGGAACTGGTGATGGCTCCGGGCCGTGACAGCCTGTGGGGCGCTGGGCTGGGGCTGCCCGGGGTCTCTGCTCCTCAGCGGTCCCCGCCCGCCTCATGGCTCCTCCTTTCCCCACAG
Seq C2 exon
TTTGCGGCTACTTCTGTCACCTGACTTGTGCCCCACAGGCCCCCCCCTGCCCTGTGCCCCCTACCCTCCTCCACACGGCCCTGGGAGTGCACCCCGAAACGGGCACGGGCACCGCCTACGAGGGCTTCCTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009736:ENSBTAT00000034021:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.289
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(62.7=88.9)
A:
NA
C2:
PF0013017=C1_1=PD(35.3=40.0),PF0016924=PH=PU(5.9=15.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACACACTCTGCGTCC
R:
CGACAGGAAGCCCTCGTAGG
Band lengths:
236-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]