BtaINT0036098 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013085 | CELA3B
Description
Bos taurus chymotrypsin-like elastase family, member 3B (CELA3B), mRNA. [Source:RefSeq mRNA;Acc:NM_001166518]
Coordinates
chr2:131428178-131429548:-
Coord C1 exon
chr2:131429414-131429548
Coord A exon
chr2:131428315-131429413
Coord C2 exon
chr2:131428178-131428314
Length
1099 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
GACTCTTCCCTCCTCCCCAGCAA
3' ss Score
8.2
Exon sequences
Seq C1 exon
GACCTCCCGGACCTACCAGGTGGTGCTGGGCGAGTATGACCGCTCTGTGCTGGAGGGCTCCGAGCAGGTGATACCCATCAACGCCGGGGACCTCTTCGTGCACCCTCTCTGGAACTCCAACTGCGTGGCCTGCGG
Seq A exon
GTGAGTGATCTCTCAGGCCGGGTACCCAGGGGCTCCTCTGCGGGCCCCTCTAGGACCCGACACTGATGCAGAGAAGACTCCCAGGGGCAATGCACCTGAAGGTCGGAGCCAGGAGAGCCTCTGGGGATCACCCCCCCCCCAAACCTCTCTCCCTACAGAGGGGACAGCAGGGCCCAGGCAGGGGCAGGAACTCCCCCAAGGCCACTTGGCTCCTTGGCTTCAGAAGAGGAGTGCCTTAGGAACCCCAAATCCAAAGGTTCCTCCATTCAGTGGACGCTCCTCCAGAGCCTCCTGGGTTCCCGGCATTGTGGGCCAAGGGAGGAGCACTGGATTGAGAGTCAGGCTCCAGCACTAAGTCGCTGTGTGGCTTGGGCAAGTCATCAACGTTCTCTGGACCCGAGTGTGACCACATGTCAGAGGTGACCTTCTGGGCTTCCTGGGCGGTCATGACGGTCAAGAAGGCCATCACTGGGTGAGAACACGGAGTAGGCTTCCATGCGTATGCAGAACTGTATGTCTGGGTGGCTTTGCTCAGCATTTTCCGGGGAGAGGATCAAAGGAGGGTGCAGAACCCCTGTGAGTGCACGAGTGAGGGACCGTGAGGATCAAGACCTGGACCCATCTCCACGGGGCTCCTGGGGTAAGCGCAGAGAAAGTCAGATCCAGATGCAATGACCTGAGTGACAAACAGGCAGATGAAAAGACAGCGCTGGTTCTCCGAGTGTGGTCCCCAGGCCAGCAGCACCTGGGAACTCACTAGGAAGGCCAGTCTTCGGGGCCTCCCAAACCCACTGCATCCGAAACTCTGGAACTAGCTCCGACAACCTGTATATTAACAAGCCCTCCTCTGATTCTGACACGGATGACGTGTGCAAACCCCTGGTATAAAAGCCGAGCACAGTTACTGAGGCCAAGGGTCATTGTGGGCTGAAAAGGCCAGGGGAGCTTCCAGAAGTTGCTCAGCAGTAAGAATGCATGGGATCCAGAGGGAAGCATCGGGGGCATCCTGGAGGTGAAATATCCTGAACAAAGCTAGGGCCTGGAGCTTAGTCTGACTGGAGGGCCAGGCTCCTCCCAGTGACTCTTCCCTCCTCCCCAG
Seq C2 exon
CAACGACATCGCCCTCGTCAAGCTCTCGCGCAGCGCCCAGCTGGGAGACAAGGTCCAGCTTGCCAACCTCCCTCCCGCCGGCGACATCCTGCCCAATGAAGCCCCCTGCTACATCAGCGGCTGGGGCCGTCTCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013085:ENSBTAT00000017401:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCCCGGACCTACCAG
R:
TGTAGAGACGGCCCCAGC
Band lengths:
272-1371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]