BtaINT0038730 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012274 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr11:98813573-98814749:-
Coord C1 exon
chr11:98814628-98814749
Coord A exon
chr11:98813771-98814627
Coord C2 exon
chr11:98813573-98813770
Length
857 bp
Sequences
Splice sites
5' ss Seq
GGGGTGGGT
5' ss Score
3.34
3' ss Seq
TGCTCCTGCTCCCCGTGCAGGTG
3' ss Score
10.97
Exon sequences
Seq C1 exon
GCCCAGAGGAGGCCCCACCAGAGCCAGGGGGCGCCCAGGCCAGCATGGAGGAGAGCCAGGAGGAGCTGACCGGTGGCCTGGATGTGGCAGAATGTGAAAAAAGAGCGAGAGAGATGCTGGGG
Seq A exon
GTGGGTAGAGATTCTGATGAGGGCTGCACTGTGTGCCCAGTGGTGGGATGGCCTCCTTCTGCCCCAGCCATGCCCCCCCTTCCCGGGACCCCTGGTGTTTCCCCTCCTGTGAAATGTGACAGCAGCCCTCCTCCTGGGTTTGCGGGCAGACCAGATTGGGTTTGACAGTGTTCCTCAGCTCTCATATGGGCCTTTATGTGCCTTTGCTCTGACAGTCTGGAGGCACTTTTGGTGATAAGGGTCCCTTCCAGCTTGCTCACCCCAAAACTAGAGCCCCCACATGAGTTACATTGCTCCAGCGGAGAGAGCGTGGTGTGGAAGCCTCCGTCTGGGGCCTGGGGCCCAGTCCTGCCTTCCACTTTGTGCTGTGTGCTAAGTCGCTTCAGTCCTGTCCAACTCTTTGCGACCGTATGGGCCATAGCCCACCAGGCTCCTCTGTCCATAGGATTCCCCAGACAAGAATGCTGGAGTGGGTGGCCGTGCCCTCCTCCAGGGGATCTTGACGCAGGGACTGAACCTGCATCTCTCGTGTCTCCTGCATTGGCAAGCGGGTTCTTTACCACTGGCGCCACCTGGGGAGCCTTACCGAATAACTGTGGCCAAGCCCCTTCCTTGCCTTGCGTCTTCGTTTCTCCATCTGTCACAGGAGGCAGGGAGAACTGAGGGGGACATGGGTTTTTGAATACTGACTGCAGTGCTGCCTGGCTGAGCGAGCCTGGGTGATCACCTAACGGCTCAGAGCCTCAGTTCTCCCACCTGTAAAATGGGCTATCAGGAGGGCTCCTAGAAGTTTAGCACAGGGCTGACTCACCATAAGCGCCCAGCTGGTGGTAGCTCTGCTCCTGCTCCCCGTGCAG
Seq C2 exon
GTGTGGGGGGCTGGGGGATCCCTGAAGGTCACCATCCTGCAGAGCAGCGACAGCCGGGCCTTTAGCACCGTACCCCTCACACCCGGTCCCCGGGCCAGCGACTCTACCTCTGCCACCCCTGCGGCGGCCAGCACACCCTCTAAGCAGGCCCTTCAGTTCTTCTGCTACATCTGCAAGGCCGGCTGCAGTAGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012274:ENSBTAT00000016302:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.805 A=NA C2=0.394
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF121713=zf-C2H2_jaz=PU(51.9=21.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGAGGCCCCACCAG
R:
CTACTGCAGCCGGCCTTG
Band lengths:
310-1167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development