BtaINT0038876 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011333 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]
Coordinates
chr22:7883478-7887442:-
Coord C1 exon
chr22:7887275-7887442
Coord A exon
chr22:7883534-7887274
Coord C2 exon
chr22:7883478-7883533
Length
3741 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
TATTTCTTTTTACCTTGCAGTCG
3' ss Score
9.31
Exon sequences
Seq C1 exon
GACATATATGGGTCTTAGAAACCACTTCCCTGGTGAAGCTGAAACACTGTATAATTCCCTCGAGCCGTCTTATCAGAAGAGTCTTCAGACTTACTTAAAGAGTTCTGGCAGTGTAGCATCTCTTCCACAATCAGACAGGTCCTCATCTAGCTCCCAAGAAAGCCTCAA
Seq A exon
GTAAGGTCATATAAAGGATCATTACTGATTACTTCCTCTTTTCAGCTCCACAGAGTTCCTTAAGTTGGATGGCTGAGTATCTGATTGCTTTCTTCTTAAAGCCTTGGAAGAATGATGACTGAATGTGCTTATTTCCTTTGGTCTGTTGCCTCAGGGGTTGGATTACATGCCTGTATAGCTTCTTCTCATTGGGTTGAGTTTTAGGGATTCAAAGTTTGTGCGAACATTTTCAGACACGTTTTGTTAGAATATGTTCATATCTTTGAGAAAGACTGGAAACCACTAATTCATATACTTTTTTTTAATACACCCAAAATAGTCCATATAGTAAGTAGCCCATTTCTAGGGCACTGTTGTGGAGGGATTATAATGGAGATTCATAAATCATCTTTAAAACTTTTACACAGCACTGTGTGACTGGTAAACACGCCATTGCTTTCTTTGCTTGCCTCTGGCATAGTTTGAGATTTTCAGCAACTCCCTCCAGGGGACAAAATTATCTAGTGTCTGACTCACTTCTCTGTGACTCCACTCTCATCATTATGCTGGCCACCTCAAACCCTTGCTGCCTTGGCAGTTATACCCTATTTTCTGTTTCTCTAGCCCTGTAAGATGGCTAAGATCCCTAGCAGTGGCCACAAATATCTGCAGATTTCTCTAGGGAAGAGCAGCTCACAGAATATCGGTCTGCCTCGCTGTAGTTGCTGTGTCTTTAGGGTCTTCATCCCCACAAAGACTGCTAGTTGCGTTGGCAACTTCCTGGTCCTGGACAGGTACCAGCGTGGGCGAGAGAGGTATCTGGGGCACAATTGCAGGAAGTACTGACAGGGTCTTATGAGTACTGTACTAAATAAGAGTTCAGTGGCTTACAAGTTTTCAGAGTAAAAGAAGATACGATTTGATTAAAAAAAAAATAATTATTGTAGGAATAATCGTACCTAAACTTCTATTTAAATTTGTGATAAATCCTTCACCTAAAATGAGCTTTGTTGCTTTTTTTCCCTTTACTTTTTCTTGCTGTACTCAAACTTTGTATATGAGTCGGCTGAAGATCATTGTTAAAATACAGAATCTGATTAAGTAAATCTGGGATGGGACCTGAGATTGTGCATATTTTACACATTCCCATGGAACAACAGACTGGTTCCAAATAGGAAAAGGAGTGCGTCAAGGCTGTATATTGTCACCCTGCTTATTTAACTTATATGGAGAATACATCATGAGAAACGCTGGGCTGAAAGAAGCACAAGCTGGAATCAAGATTTCAGGGAGAAATATCAATAACCTCAGATATGCAGAGGACACCACCCTTATGGCAGAAAATGAAGAGGAACTAAAGAGCCTCTTGATGAAGGTGAAAGAGGAGAGTGAAAAAGTTGGCTTAAAACTCAATATTCAGAAAACTAAGATCATGGCATCTGGTCCCATCACTTCATGGGAAATAGATGGGGAAACAGTGGAAACAGTGTCAGACTTTATTTTTCTGGGCTCCAAAATCACTGCAGATGGTGACTGTAGCCATGAAATTAAAAGATGCTTACTCTTTGGAAGAAAAGTTATGACCAACCTAGATAGCATATTAAAAGCAGAGACATTACTTTGCCAACAAAGGTCCGTCTAGTCAAGGCTATGGTTTTTCCAGTGGTCATGTATGGATGTGAGAGTTGGACTGTGAAGAAGGCTGAGCGCTGAAACATGGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCTATTCTGAAGGAGATCAGCCCTGGGATTTCTTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTTGGCCACCTCATGTGAAGAGTTGACTCATTGGAAAAGACTCTGATGCTGGGAGGGATTGGGGGTAAGAGGAGAAGGGGATGACAGAGGATGAGATGGCTGGATGGCATCACTGACTCGATGGATGTGAGTCTGAGTGAACTCCAGGAGTTGGTGATGGACAGGGAGGCCTGGCGTGCTGCGATTCATGGTGTCGCAAAGAGTCGGACACAACCGAGCAACTGAACTGAACTGAACTGAAGGTGATGTCACTGCTTTTTGTCTATGGACCATTCTTTGAGTGGCAAGGATCTAAATAAGGTATTTTATTAGAACATCTTTAAACATAAACAACTTTGAAATCTGTGGACTTGAATCAATCTGCCTCAGCATAACAGTTTTAGGAGACAGTTATAAAAATAATATAATATTGGGTTTGATAACCAAATGCCAAATTTACCATTTAATAATAATAACTTAGGGCTTCCCTGGTGATTCAGATGGTAAAAAATTGGCCTGCAGCGTGGAGACCTGGGTTTGATCCCTGGGCCAGGAAAATCCCTTGGAGAAGGGAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATTCCATGGACAGAACCTTGTGGGCTACAGTCCATGGGGTCACAGAGTCAGACACAGCTGACCGACTTACACACAATAATAACTTAAGAATATTTTCAGTAGTCTGACATTACCTCTCTTCCCCTCACCTTTAAAATTTGTAGATAGGGAATTCCCTGGCAGTCCAGTGGTTAGGACTCTATGCTCTCACTGTCATGGACCCAGATTCAGTCCCTGGTCTGGGAACTAAAAATCCCACAAGCCAACTTCTCTGGTGGTCCAGTGATTTAAGAATCCCCCGCCAATGCAGAGAATACAGATTCGATCCCTAGGCTGGGAAGATTGTACATGTCACAGGGCAGCTAAGACCGTGGGCCACAGCTGCCGAGCCTGCGCTCTACAGCGCAAGACCCACAACTACTGAAGCTCGGGCTGTAGAGCACGCGGCTTCAGAGAGCTTGTGCTTCTCTAGAGCACAAGAGAAGCCTCCGCAACGAGAATGCCTTGAACCACAACTAGAGGAGGCCAGCACAGCAACGACGGTCAAGTGCAGCCAAAGATAAATAATAAAATTTTTAAAAATCCCACAAGCCACATAGCACGACAAGCAAGTGAAAAAATGAATAATATAATAAAGTAAAATAAAATTCATAGGTATACTTTCCAGGCCCTCTTACATACTTAGATATGTTTATTTTGGGGCTGCAGAGTACCATTGTAGTTACAGGTAAGTAATCAGAAAAGATATTAAAGGAGGCAGTGGATTCTTTTGAAATGATTCTAGCTGTTTTGCTTTCTGTACGTGTTAATACACGTTACCCTCAGCAGCAGTTGTAGCTTTGTTTCTCTTGCCCCACACAGTAACACTTAATAGCACTACTGTAGATGGCATTATATCTACAGAGTAATTGCTTGACTTTCCAGTGGCCACAACTGTTATGACTTAGGTGATGGAGGCTTTGGTTTCAGTGACTCCCTGTGTACTGGTAATAATACTCCCTCTCTCTCCTTCTAAGTAAAATACCTCAGAATAAAAGTGTTGGAGAGGGCCATTATTGAGTTCCCTGTTATAATATGTGTGCCGAGGACAAGAGTGAATAGCAGCCACCTGGTCCCTGTTCCTGTAGAGCTTACAGTCTTTATTCAGTGCTAGTTATTTCATTTTTGCTTCACAACTAATTTAGATACCAGTGATACATGACAGCAACTGTTCTGAAGTGATTTGTCAAAGAAAAATTGAAACCAAGTACTTCTCAAGTCTTCAGAAATCTCAGTGGTGTTTCATTAAGTGTTATCAGAGGAGTGATAAATTATTAAAAGTATTTCTTTTTACCTTGCAG
Seq C2 exon
TCGCCCCTTTTCTGCAAAATGGTCTACAGCAAACCCATCTGCTGTGGCTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011333:ENSBTAT00000015071:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.497 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=PD(13.3=50.9),PF123333=Ipi1_N=PD(2.7=3.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]