BtaINT0039244 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014546 | CLEC7A
Description
C-type lectin domain family 7, member A [Source:HGNC Symbol;Acc:HGNC:14558]
Coordinates
chr5:100285880-100290369:+
Coord C1 exon
chr5:100285880-100286031
Coord A exon
chr5:100286032-100290250
Coord C2 exon
chr5:100290251-100290369
Length
4219 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
GTATTTATGTTTCCTTACAGGAG
3' ss Score
10.91
Exon sequences
Seq C1 exon
GAGTTTTCTCTAGCTCTTGTCCCCCTAACTGGATCACACATGAGGATAGCTGTTATCTATTTAGCACACTATTAGATTCCTGGGATGGAAGTAAAAGACAATGCTTTCAACTGGGCTCCCATCTCCTGAAGATAGACAGCTCAAAAGAGTTG
Seq A exon
GTAAGTGTAGATTTTGGTTATAATATCTGTGGTCTATACTGAGCAGAAAAGTAGAGGTAGTTTCCAGATAACTATTTTCCCTAAGAGAAAGTAACTTTACGTATTCTCCATAATTATAATAATAGCATATATTGAGTAAAGTATATAATACACGCTTTTCTTTTTAATTAATTAAAATATGAATACATTTTGGATTTCCCTGCTAGCTCAGTTGGCAAAGAATTCACCTGCAATGCAGGAGACCCAGATTCGATCTCTGGGTTGGGAAGGAAATGACAACCCACTCCAGTACGTTACACTTTAAAATTAATCCTTTAAACACAACTCCAAGTTGACTCTAATAATCAAGCCACACTCATTTTTGTGGGTTTGGACTTTAGGTTTTAAATGTGGTACAGTAAAATAGAAGGTTCTTCCCCTTATCACCATAATTATCAAGCTATGATAATATATACTTATAAATAATTTATTCCTTGCAAGATACTGGGAAAGGCAAAGAGGTTTAAACTTCTAGCCATGCTCAACTAATTTTTAAGAAAATAGAAACGACTCAACAGCTGTTAAAAGTTAAATATCTTGTATTGGCACCAAATGCCATAGAAATTCAGAGAGAGAAATTCCTGTAGACATAAAAATTGCACAGAAAAAGAGCAACTTACAATGCATCTTGCCTGAAGGATAGAACTCAGATGAGATACAAGGAGGAGTTAATAGTCAGGGAATATTCTACCTTATAAATCTGAACAACCTACAACTTCTATACTTACTTTTACTACTCTCAATTTTTGTGTTTCTGTTTTGTTTTCCCCACAGTTGTAGTTGACATAAAAATTAATGGAAGTAAATGTATGGCAAAAAAAAGGGGGCATGGGACTGGAAGTCTGTCTGGCTTTTAGACCTTCCTATAATTGCCACTTTGTTGAGTTATATTTGTCAACAATTCAAATATGATCATTAACCCCTAGATTACTTATTCATAAAAAGTGTAGTAGAACTAAACTGTTTTAAGATAGTCATTTAACTCTGCGAAGCATTTCTTGACAAAGGCTATATGAACTTATATTTTCAATTAAAATTGTGGCGATGATAGTAGCCTGTCATCCATGAACATGGCCTACAGACTCTGTCGTTCTTGGATTTATTCTGGTAGATTGAATGCAGGAAGCACAATTTTGACATCAAGGATTTATTTATTTATTTATTTATTTATATTAAATTTTATTGGAGTATAGTTGCTTTAGGATGCTGTGTTAGTTTCTGCTATAAAACAGAGTCCCCTTTTTTTAAGATTTCCTTTCCATTTAGATCACCACAGACCATTGAGTAGAGTTCCCTGTGCTATATGGTAGGCTCTCATTAGTAATCTCTTTTATACATAGGCATGTATGTATGGTACTCCCCTGGTGGCTCAGTGGTAAAGAATCTGCCTGTGATGCCGAAGATGCAGGAGACCTGGGTTCCTTGGGTCAGGAAGATTCCCCTGGAGAAGGGCATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAAAGGAGCTCAGCAAGCCACAGTCCATAGGGTGGCAAAGAGTCAGACACGACTGAGTGACTGAGCACGAGCATTGAGCACAAGTATATATTTATATATCAATCCCAATCTCTCAAGTCATCCCTCTCTCCTTTCCCCCTTGGTATTCTTAAATTTGTTCTCTATGTTTGTGTCTCTATTTCTTCTTTGCACATAAGTTCATCTGTATCACTTTTTCCAGATTCCCCATATCAGCAACATTATATGGTATTTATTTTTCTCTTTCTGACTTACTTCATGGTGTATGGCAGTCCATCTCTAAGTCCATCCATGTCTCTGCCAATGGCACTATTTCATTCATTTTTATACCTGAGTGATATTCCGTTGTTTTTACGTACTACATCTTCTTTATCCATTTCTCTGTTGATGGAAATTTAGGTTGCTATAATGTCCTGGCTATTCCAAATAGTGCTGCAATGAACATTGAGGTGCATGTGACATTTCGAATTACTGTTTTTTCTGGGTATATGTCCAGCATTGGTATTGCTGGGTCATATGGAAGTTCTACTTCTAGTTTTTTGAGAAACTTCCATACTGTTCTCCATAGTGGCTGTACCAATTTACATTCCTACCAACAGTGTAGGAGGGTTCCATTCTCTCCACAACCTCTCTAGAATTTATTGTTTGTAGTTTTTTGATGATGGCCCTTCTGACTGGTGTCACCTCTGACTGGTGATACTTCATCGTAGTTTTGAATTGCATTTCTCTAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGATGGAGGAGCCTGGTGGGCTGCAGTCCATGGGGTCGCTAAGAGTTGGACACGACTGAGCGACTTCACTTTCACTTTTCACTTTCAAGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGTGAATCCCAGGGATGGCGGAGCCTGGTGGGCTGCCGTCTATGGGGTCACACAGAGTCGGACACGACTGAAGCGACTTAGCATAGTTAGTGATGTTGAACATCTTTATACGGATTTTTTGGCCATTTGTATGTCTTCTTTGGAGAACTGTCTCTTTAGGTCTTATGCCCATTTTATTCTGTTGTCTGTTGTGCTGATACTGAGTTGCATGAGCTGTTTGTGTATTTTGGAGATCAACCCCTTGTCAGTTGTTTTGTTTGCAAATATTTTCTGCCATTCTAAAGACTGTCTTTTTGTCTTGCTTATGATTTCCTTTGTGGTACAAAAGCTTTAAGTTTAATTAGGTCTCATTTGTTATCTATTTTCATATGTTTTTATTTTCATTATTCTAGAAGGTGGGTCAAAAAAGATCTTACTGCTATTTATGTCAAAGAGTGTTCTGCCTATGCTTTTCTCTAAGACTTACAGTGTTCAGCCTTACATTTAGGTTTTTAATTCATTTTGAGTTTATTTTTATATATAGAGTTAGGGAGTGTTCTAATTTAACTTACCATTGCAATAGAAAGGATAATACCTCAGAATAAACCTAACTTATGGAGGCAAAGAAAGTGCAGAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTACAAGGAGATTCAGCCAGTCCATCCTAAAGGAAATCAGTCCTGGGTGTTCATTGGAAGGACTGACGTTGAAGCTGAAACTCCAATATTTTGGCCACCAGATACGAAGAGCTGACTCATTTGAAAAGACCCTGATGCTGGGAAAGATTGAAGACGGGAGGAGAATAGGACGACAGAGGATGAGATGGTTGGATGGCATCACTGACTCTATGGACATGAGTTTGGGTAAACTCTGGGAGTTGGTAATGGACAGGAAGGCCTGGCGTGCTGCAGTCCATGGGGTCACAAAGAGTCGGACACGACTGAGCGACTGAACTGAACTGATGGAGGCAAAAAACCCGTACTCAGAAAACTATAAGATACTGATGAAAGAAATCAAAGATGACACAAACAGATGGAAAGACACACCATGTTCTTGAATTGGAAGACTAGTACTGTGAACATAACTATACTACCCCCCAAAATCTACAGATTCAATGAAATTTTCCTATTAAATTACAAAAGGCATTTTTCACAAAATTAGAAGATTTTTGCAATTTGTATGGAAACACAAAAGACCCCAAATAGCCAAAGCCATCTTGAGGAGAAAAAACAGAGAGGGAGGAATCAGGCTCCCTGACTTCAGACTATACAGTCATCAAGATAGTATGGTGCTGGCACCAAAGCAGAAATATAGATCAATGGAATAGGATGGAAAGCCCAGAATTAAACCCATGCACCTTTGGTCACTTAATCTATGACAAAAGAGCCAGAAATATACAATGCAGAAAAGACAATCTTTTCAATAAGTTGTTCTGGGAAAGCTGGACAGCTATACGTAAAAGAAGGATCTATTCTTTGTTGGAAAATTAAATGATAAGGACTCTGAAAAAATGAGATATGCTTTTTGAGACAGTGAGTGGCATTCAAGAATTGGCACATCTATCTAGGCTGATGCCAGTATACGCATGCATCCTCCATCAAGGTGATTCAATCTCTGTCTCTCAAAATCTCCTAACAGTCTTTCTCTGTATCTTACCTGTCTCTATCATCTCTGTCCTTCACTGTCTCTCCTTCTTTCTCCTTGACTTGTATTTATGTTTCCTTACAG
Seq C2 exon
GAGTTTATATCAAGGCAAGTGTCTTCCCAGCCTGATCATTCATTTTGGATAGGGCTTTCTCGCCGTCAGACAGAAGAACCATGGCTCTGGGAGGATAGCTCCACCTTGTTGTCTAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014546:ENSBTAT00000019331:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083915=Ly49=PD(14.7=9.8),PF0005916=Lectin_C=PU(25.2=52.9)
A:
NA
C2:
PF0005916=Lectin_C=FE(36.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]