BtaINT0042502 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012678 | COLGALT1
Description
Bos taurus glycosyltransferase 25 domain containing 1 (COLGALT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001098955]
Coordinates
chr7:5476012-5476508:-
Coord C1 exon
chr7:5476402-5476508
Coord A exon
chr7:5476145-5476401
Coord C2 exon
chr7:5476012-5476144
Length
257 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CCACCCCTCCACACTTGCAGAGC
3' ss Score
8.05
Exon sequences
Seq C1 exon
GTCTTCATGATCAACCTGAAGCGGCGGCAGGACCGGCGGGAACGCATGCTGCGGGCCCTGGAAGAGCAGGAGATAGCGTGCCGGCTGGTGGAGGCTGTGGATGGCAA
Seq A exon
GTGAGTTGAGCCCTGCCTGGAGAGGGGCGGCGCCGCGGGTGGGTGTAGACCACCCTGATGGCCGCGGAGGCGGCGTGGGTCTGACGCTGGCTGGGTACGCTGGCTGGGTACGCATGGGTATAGGCCACACCCAGGCAGGCCACATCCGGTCCGGGATGGGGTGGGGGAGGGTGGGGGAGGGTGGGGGAGGGAGGCTCACTGGTGGGATTGTGGATAGATACAGTCTTCCTCTGCCCCCCACCCCTCCACACTTGCAG
Seq C2 exon
AGCCATGAACACCAGCCAGGTGGAGGCTCTGGGCATCCAGATGCTGCCAGGCTACCGGGACCCCTACCATGGGCGGCCCCTCACCAAGGGCGAACTGGGCTGCTTCCTCAGCCACTATAACATCTGGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012678:ENSBTAT00000016841:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=FE(18.8=100)
A:
NA
C2:
PF0175512=Glyco_transf_25=FE(23.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGATCAACCTGAAGCGGC
R:
CTCCTTCCAGATGTTATAGTGGCTG
Band lengths:
236-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]