BtaINT0043646 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038496 | CR2
Description
Bos taurus complement component (3d/Epstein Barr virus) receptor 2 (CR2), mRNA. [Source:RefSeq mRNA;Acc:NM_001198991]
Coordinates
chr16:5292438-5294470:+
Coord C1 exon
chr16:5292438-5292461
Coord A exon
chr16:5292462-5294394
Coord C2 exon
chr16:5294395-5294470
Length
1933 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TACTCTGTTTTGTATTTTAGGTT
3' ss Score
12.03
Exon sequences
Seq C1 exon
GTTCACTTGCTCCTCTTATTGCTG
Seq A exon
GTAAGTTTTCTTAAATTCTTCAATAAAACTTCTAAGGTAATTTATACAAATATATGTAAATTTTGAGGCACTGGAGAAATATCAATAAACTCAGATATGCAGATGACACCACCCTTATGGCAGAAAGTGAAGAACTAAAGAGCCTCTTGATGAAAGTGAAAGAGGAGAGTGAAAAGCTGCTTAAAACTCAACATTCAGAAAACTAAGATCATGGCATCTGATCCCATCAGTTCATGGCAAACAGATGGGGAAACAATGGAAACAGTGACAGACTTTATTTTTGGGGGCTCAGAAGTCACTGCAGATGGTGACTGCAGCCATGAAATTAAAACATGCTTGCTCTTTGGAAGAAAAATTATGACCAACCTAGACAGCATATTGAAAAACAGAGGCATTACTTTGCCAACAAAGGTACGTCTAGCCAAAGCTTTGGTTTTTCCAGTAGTCATGTATGAATGTGAGAGTTGGACTATAAGGAAAGCTGAGGGCCAAAAAACTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGTCCCTTGGACAGCAAGGGGACCCAACCAGTCCATGCTAAAGGAAATCAGTCTTGAATATTCATTGAAAGGACTGACACTGAAGCTGAAACTCCAATACTTTGGCCACCTGATGTGAAGAACTGACTCATTTGAAAAAACTTTGATGCTGGGAATGACTGATGGCAGGAGGAGAAGGGGACGACTGATGATGAGATGGTTGGATGGCATCACCAACTCAATGGATATGACTTTGAGTAAGCTCCAGGAGTTGGTGATGGACAGGGAAGCCTGGAGTGCTGCAGTTCATGGGGTCGCAAAAAGTCAGACGAGCAACTGAACAGAACTGATATGTGCTGTGCTTAGTCACTCAGTCATGTCAAACTCTTTGTGATCCTATGGACCGTGGTATACCAGGCTCCTCTGTCCATGGAATTCTCCAGGCAAGAATACTAGAGTGAGTTGCCATTCCCTTCTCCAGGGGATCTTCCCAACCCAGGGATCCAACCCAGGTTTCTCGCATTGCAGGCAGATTCTTTACCATCTGAGCCACCAGGGAAGCCCTGTATCCTGCCTGTTAAGTTTTTCATTTGAACTCATGAGAAATTGTACTTTTTTTTTTTTTTTTAAGTGTTCTAAGGCTCTTTTAATGTGCACTTCACATCACAAACTGTCACTTTTGGATGGGATGAAATGAATGACTTGATCAGCTACTCCCAGTTTTTAGTTCAAAAGTTTAGGTTTACTAAAAGTTTGGGCTTCCCATATGGTGCAGAGGTAAAGAATTCACTTGTCAGTGCAGAAGATGCAAAAGATGTGAGGTCAATCTCTCAGTTGGGAAGATACCCTGAAGGAAATGACAACCTACTTCAGTATTCTTGCTTGGAGAATTCTATGACAGAGGTGCCTCACAGGCTATAGTCCATGGGGTCGCAAAAAGTACGGCATGACTGAGCTAGTGAGTGCCACACACAAAACTTTCGTTTAACTATTGGTCTTTTGCATAATTTGGTTGCTATCAAAACAGATTCATTTATTCTGCAGTGGCAAAATATATTTCACAACTGAGAGTTAAATATTGTATGAAAAGTCACGGAATCCTGGTGTCCTGAGCTTCTAATTTCACTCCAGTGACAAGAATATTACTGATAAAACTGAAAAGAACAGAAAAGCTGAACCTAAACTTGACTGGAACCTTGTGATCAAATGCTTGGTGCTTTAGAATAAATATGAACTGGATTAAATCCAAAACGTAAGCCCACATACAACTATTTTGGAATTTAGTATCTGTATGGCTGAAGAAGAATAAGCAAAAAAGTCACATAACATTTTCCCCACCACTAGGAACAGGCCCCACAATCACTTCAAAACAATGTAGGTTACATTTTTCTATCGTTTAATACTCTGTTTTGTATTTTAG
Seq C2 exon
GTTTTTCTGCTGGGGTAATAGCTCTTTTCTGCTTGGGTGCTGTCGCCTTATACATGATATCAAAACACAGAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038496:ENSBTAT00000063039:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development