BtaINT0043709 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014391 | CRB2
Description
crumbs family member 2 [Source:HGNC Symbol;Acc:HGNC:18688]
Coordinates
chr11:94520482-94521347:+
Coord C1 exon
chr11:94520482-94520598
Coord A exon
chr11:94520599-94521229
Coord C2 exon
chr11:94521230-94521347
Length
631 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CCCTCTTCCCTGCCTCCCAGATG
3' ss Score
11.2
Exon sequences
Seq C1 exon
GTTGCCTGTCCCACCAGAGGGGTGCAGCCTGAACATCACCTGTCTCAACGGTGGCCAGTGTGAGGAGGGGCCCCAGGGGGCCAACTGCAGCTGCCAGGAGAGCTTTGCTGGGCAGAG
Seq A exon
GTGGGTCTGGGCTCCGTAAGCCTGGGAGGTGCGCTGGGGAGTGTGGAGAGTACAGATCCAAAGGCAGGGAGTGGACGTCCGGATCCCCTCCAACCAGGGTGGGTGAAGTGGGGTATGGAATCTTGCTCACCTACTCAGCCCTTACTGTCATCACTGCGCTAGACACTCCACCTCTGTCACCTGAGATCTTTCCTTCTGGGGCTTCCAAGACCATCATCCTCTGTTACCAGACACCTGCTGGAGAGTAGTTGCCTAGCGGTGTTTCTTAGAGCACCACATTCAGCATCAGGACCACGTGGGGATACTATGCAAATAGAGGCTCTGGGTCCTCCTATCGGAGTCAGCATCCCTGGGCAGGCGCCTTTACACAGGCTCCCCTGTGCTTTCAATGGAGTGAGAGGGTCGTTCTTGGTCACGAGTGTTGGGGTGAAGGGGTCTGCTGCATAATGAGGGTCGTATTCAACTTAGGTCCCCCTGGCAGGGCCCAACCGGGTTGGGACCGTGCTGCGGGCAGCGGGTGAGCGGCGTGGAGGGTGTGGGGCGGGTTTGAGGAGGTAAAGGAGCTGGGGGAGCTAGAGGCAGCCTGGGAGGGAGCAGCTTCCTCAGCCCCGCCCTCTTCCCTGCCTCCCAG
Seq C2 exon
ATGTCAGATCCCCTGTGAAGCCAACCCCTGCTTGAATGGGGGCACCTGCCGGGCAGCTGATGGGGTGTACGAATGTGTCTGCAATGCCAGGTTCTCAGGCCAGTTCTGCGAAGTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014391:ENSBTAT00000043337:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=80.0)
A:
NA
C2:
PF0000822=EGF=PD(0.1=0.0),PF0000822=EGF=WD(100=77.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCTGTCCCACCAGAGG
R:
CAGAACTGGCCTGAGAACCTG
Band lengths:
224-855
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development