BtaINT0043716 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014391 | CRB2
Description
crumbs family member 2 [Source:HGNC Symbol;Acc:HGNC:18688]
Coordinates
chr11:94516081-94517541:+
Coord C1 exon
chr11:94516081-94516944
Coord A exon
chr11:94516945-94517032
Coord C2 exon
chr11:94517033-94517541
Length
88 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
GGCACCCTCTCTCCCTGCAGAGG
3' ss Score
10.94
Exon sequences
Seq C1 exon
GCCCAACGTGTCAGGAAGACATGGACGAATGCCTGTCGGAGCCTTGCCTCCATGGTGGGACCTGTGAAGACACCGTGGCAGGCTACATCTGTGGGTGCCCCGAGGCCTGGGGTGGATTGGATTGTTCTGTGCCACTCACCGGCTGCCAGGGCCACACTTGCCCACCGACTGCCACCTGCGTCCCTACCTTCGAGTCAGGGGTTCACAGTTACACCTGCCGCTGCCCACCTGGTACCCATGGACCTTTCTGTGGCCAGAATACTACATTCTCCATGGTGGCTGGGAACCCCTTACGGGCTTCGGTGCCAGCTGGCAGCTCCCTAGGTCTTGCCCTGAGGTTTCGTACCACGATACGTGTGGGTGCCTTGGCCACGTGCTCTGACACTCAAGGCAGCGTGGAGCTGGCGCTGGTGGAGGCCAGGCTTCAGGCCACACTCTGGAGCCACGGCAAGAATGTGCTCGTCCTGAGGCTGCTGGAACCACCCCTCAATGATGGCCACTGGCACCGAGTGGAGGTGACGCTCCGCCTGGGGGTCCTGGAGTTGCGGCTCTGGCATGAAGACTGTCCCGCCCACCTCTGTGTGGCCTCCAGTCCCATGGCCACGGCTGCCCCGGCCCCCACGCCTGCTGGGTCCCGCTTCACCCAGCTGGGCGGCGTGGCCTTTGCGGGCTGCCTCCAGGATGTGCAGGTGGATGGGCATCTCCTGCTGCCCGAGGACCTTGGTGAGAATGTCCTCCTGGGCTGCTGGCACCAGGAGCACTGCCAACCTCCGCCTTGTGCCCACGGAGGGGTCTGCGTGGACCTGTGGACTCACTTCCATTGTGACTGCCCCCGGCCCTACAGAGGTCCCACGTGTGCTGATG
Seq A exon
GTGAGGCACAGGCCAGGTGGGCCCCAGGGCAGCGGCTGTGCCTGCCGTGGCCCGCAGGCCTCACGCCTGGCACCCTCTCTCCCTGCAG
Seq C2 exon
AGGTTCCTGCTGCCACCTTTGGCTTGGGGGGCACCCTGAGCTCTGCCTCCTTCCTACTCGACCAGCCGCCAGGCCCCAACCTCACCGTGTCCTTCCTCCTCCGCACCCGGGAACCTGCTGGCCTTCTGCTCCAGCTCACCAACGGTTCGGCCGCTGGCCTGACAGTGTTCCTGAGCGAGGGCCAGATCTGGGCCGAGGCACTGGGCAGTCCTGCTCTGGTGCTCCCGGGGCGCTGGGATGACGGGCTCCGCCACCTGGTGACACTCAGCTTCGGGCCTGATCAGCTGTGGGGTGTGGGGCAGCAGGTGCACGTGGGCGGCAGGCTCCTCCCCGGTGACGCCGAGCCCTGGGGTGGGCCCTTCCGAGGCTGCATGCAGGACGTGCGACTCAATGACCTCCACCTCCCCTTCTTTCCACCACTGCTGGGGAACTCCAGCCTGCCCAGCGTGCCCGGCCGCGGGCAGTCCTGGAACCTCACCATGGGCTGCATCTCTGAGGACACATGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014391:ENSBTAT00000043337:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.012
Domain overlap (PFAM):
C1:
PF126612=hEGF=PD(23.1=1.0),PF0000822=EGF=WD(100=10.7),PF0221019=Laminin_G_2=WD(100=41.9),PF0000822=EGF=WD(100=10.7)
A:
NA
C2:
PF0000822=EGF=PU(3.2=0.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCTGTGGACTCACTTCC
R:
GAGGAGGAAGGACACGGTGAG
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development