BtaINT0043717 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014391 | CRB2
Description
crumbs family member 2 [Source:HGNC Symbol;Acc:HGNC:18688]
Coordinates
chr11:94517033-94518274:+
Coord C1 exon
chr11:94517033-94517541
Coord A exon
chr11:94517542-94518108
Coord C2 exon
chr11:94518109-94518274
Length
567 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
CTGTCCCGATTCTCCTGCAGCCT
3' ss Score
9.27
Exon sequences
Seq C1 exon
AGGTTCCTGCTGCCACCTTTGGCTTGGGGGGCACCCTGAGCTCTGCCTCCTTCCTACTCGACCAGCCGCCAGGCCCCAACCTCACCGTGTCCTTCCTCCTCCGCACCCGGGAACCTGCTGGCCTTCTGCTCCAGCTCACCAACGGTTCGGCCGCTGGCCTGACAGTGTTCCTGAGCGAGGGCCAGATCTGGGCCGAGGCACTGGGCAGTCCTGCTCTGGTGCTCCCGGGGCGCTGGGATGACGGGCTCCGCCACCTGGTGACACTCAGCTTCGGGCCTGATCAGCTGTGGGGTGTGGGGCAGCAGGTGCACGTGGGCGGCAGGCTCCTCCCCGGTGACGCCGAGCCCTGGGGTGGGCCCTTCCGAGGCTGCATGCAGGACGTGCGACTCAATGACCTCCACCTCCCCTTCTTTCCACCACTGCTGGGGAACTCCAGCCTGCCCAGCGTGCCCGGCCGCGGGCAGTCCTGGAACCTCACCATGGGCTGCATCTCTGAGGACACATGCAAT
Seq A exon
GTGAGTGCCAAGAGGAAGGGGTGGGTCCTTTTTCCAGGATCTTCCCTGCATCTCTGGGAGTCAGCATGCCCTTCTACTGGTCAGGGTAGCACCAGGAGGTGGGGCGTCTGCCCATGGTTCCAAGGCTGAAGACAGAGCAGGGTTCGCTTCCATTTCTTTTCTGGCAAGCTGATCTTGCCCTCTGGTAGTCCCCATACCTCCCCTCTCAGTTGTGGTCTGAGACAGACACCCTGGCCTGGGCAGAGGGCTGCCCAAGACTTTCTGCAGGAGTTGTTTGGTGGACAGAGACACCCAGGGTCATGAACAAAGCACCAGCCCTAGAATTGGAATAGCCTGGGTGTGAGCTTGGGCTGCTCTGTTTACTGCCTTGGTGACTCAGGCAGTTGGGTTCTCCTGAGCCTCAGTTTCCTCATCTGAAAAATGGGAATGCTAGGTACTTTCCTATCTGTTTGTGAGGAGGTGATGTATCTGCAGTAGGTGCCCAGTGAAGAGCCACTGTAGGGATGTTTACGGTGGGGAGATGCCAGCCCCAGGCCTGAGCCAGTCCCTGTCCCGATTCTCCTGCAG
Seq C2 exon
CCTGAGCCCTGTCTCAATGGTGGGACTTGCCTCGTCACCTGGAATGACTTCCACTGCACCTGCCCTGCCAACTTCACTGGGCCCACGTGTGCCCAGCAGCTGTGGTGTCCTGGCCAGCCCTGTCTCCCGCCTGCCACCTGTGAGGAGGTCCCTGATGGCTTTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014391:ENSBTAT00000043337:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PU(3.2=0.6)
A:
NA
C2:
PF0000822=EGF=PD(90.3=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGGTGACACTCAGCTTC
R:
GTGGGCCCAGTGAAGTTGG
Band lengths:
344-911
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development