BtaINT0046171 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037559 | CYP2C18
Description
Bos taurus cytochrome P450, family 2, subfamily C, polypeptide 18 (CYP2C18), mRNA. [Source:RefSeq mRNA;Acc:NM_001076051]
Coordinates
chr26:15942987-15946542:+
Coord C1 exon
chr26:15942987-15943147
Coord A exon
chr26:15943148-15946365
Coord C2 exon
chr26:15946366-15946542
Length
3218 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACATATTTTTAATCTTTAAGGTC
3' ss Score
8.48
Exon sequences
Seq C1 exon
GGTCACCCTGTGATCCCACTTTCATCCTGGGCTGCGCTCCCTGCAATGTGATCTGCTCCATTATTTTCCAAAATCGGTTTGATTATACAGATCAGAATTTTCTTAACTTGCTAGACAAATTTAATGAAAATCTCCAGGTTGTGAGCTCCCCATGGATGCAG
Seq A exon
GTGAGGGCATGCTCCTTTTTTCCTGAGAAGTCATCTGTGTTCTTTTCTCTGACAAGTTCATAATTCAGTATGGACCAAGCTGTGAAGAGAATGTTTGAAAACTGAACATTTTTTAAATTTATTTATTTTATTTATTATTATTATTATTTTTTACTTTACAATATTGTATTGGTTTTGCCATACATCAACATGCATCCACCACGGGTGTACACGTGTTTCCCATCCTGAACCCCCCTCCTACCTCCCTCCCCATACCATCCCTCTGGGTCATCCCAGTGCACCAGCCCCAAGCTTCCTGTATACTGCATAGAACCTGGACTGGCGATTCATTTCTTATGTGATATTATACATGTTTTAATGCCATTCTCCTAAATCATCCCCCCCTCCCTCTCCCACAGAGTCCAAAGGACTGTTCTATACATCTGTGTCTCTTTTGCTGTCTTGCATACAGGGTTGTCATTACCATCTTTCTAAATTCCATATATATGTGTTAGTATACTGTATTGGTGTTTTTCTTTCTGGCTTGCTTCACTCTGTATAATAGGCTCCAGTTTCATCCACCAGTGTGGCAACTGGGAATCAGATTTTCCCCTCTTTGTTTTGTTTTTTTTTAGTTTGATATAGTTTCTGTTTGTTTGACTTTTGCTGCTGCTGCTGCTGTGTCGCTTCAGTCGTGTCCGACTCTGTGTGACCCCATTAGACCCCATAGAGCCCACCAGGCTCTGCCCTGGGATTCTCCAGGCAAAAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTTGCTCAGTCGTGTCCAACTCCTAGCGACCCCATGGACTGCACCCTACCAGGTTCCTCTGTCCATGGGATTTTCTAGGCAAAAGTACTGGAGTGGGGTGCCATTGCCTTCTCCATTGACTTTTGCAAGCTGTAGCTATTCATTTATTTAGTGACTTTTCTAAACTGTTTTGGCACAATCTCTTTTTTTTTGTCTAGTGTGGTTGCTGAAATTTCTGTTCCTTTAGCTTATTATGTTCAACTAGTATTTGAATAGAGTTTTTTGATTTTTGTTTTTTTTTTTTTTGCTTTTTTCTTTTTAAAAAATTGAATAAAATATTCTTTAAAATCTATAGTGCTTTACAGTTTTCAGAAGTTTCACACACAAGATTTCATATAATCCTATAAAACCCTTTTTTCCCCTCACTACCCTTGTGTTGCCCCTCCATCCTCTCCTCTCCCTCTATAGCTTATTTTCATATCTGTGAGTCTGTGGATAGCAATGCCATTGAATGTGAGGATCCTAAGAGAAGAAAAGTGAGACAAAGAGATGGAGATAGAGAGGAAGGGAGGAAAGAAGAAAGGGAGAAAGGGAGGAAATAAAGGGAAGGAAATGACTCCTAGATTTGTCCTTGTGTGCTTAGTTGCTAGTCATGTCCGACTCTTTGTGATCCTATGGACTGTACCTGCGAGGCTCCTTTGTCCATGGGATTTCCCAGGCTTTTCCCAGTATCCTGGCTTTTCCCAGGGATTTCCCAGTATCCCAAGGATACTGTGGTGGGTTGCCATTTCCATCTCCAGGGGATCTTCCTTACCCAGGGACTGAACTTTTGCATTGGCAGGTGGGTTCTCTTACCACTGAGCAGCCTGGGAATCCTTTAGCCAGGTTATTTTCAACTCTGTCTTGGTCTTCGCTTGTTACTTGCACTCAGCCTAGAGATCAGCCAGAGGTGATAGCTTAGTCTCTTCTTAGGTCTTTTCTTAGCAGGTGTCCTGCCCTGGGCATGTGTATAGCTTTCTGAATTCCTCAGTATACATGGGTGCTTTTGAATGTGCTAATTTCTTAAAGGCACTCCCTCCCCAGCTGTTCTTTCTGGAGTTTGGGGCTCTGTTGTGTGCCTTAACTGTAATCCTTTGCTCCAGGCAACTGTGGGTTTTTCATTAATCTTGCCAGGTCTTTGAGACATCCGTACTGTGTTTCCACCCTAAGTTCCAAGTCAGATGAAACAAAAACAAGTTTCTGTGTCAATACCTCAGGTGGCCCCAGACAGGTTAGAACACAGATACACAGTTCCTTGTTAGTGAGGTCTGCCCTGGTACCACCAGAATGAGGAAGCAGGCTCCCATACCACAAGCTGCCCTTGTTAAGGCCACTGCCAAGGAAGGAGGTGGGACAAGGAGAAAAAGCAATAACAGATCTTTTCTGCTGTTTTTAAGTTATCTTATCCTTGATTCAACATTTATGTGATTGCTGTAAACCTTGGTGCTCTAGAGTTCTGACAAGTTGATTCTGATAGTTTTTGCTTAATTTTCTGACGCTTTTTAAGGCCTTCTGAGTTGTCTACTGCATCATTTTTGCTGATGTTATTCTAAGTGAATGTTTGAAAGTAACAATCCTGCCTTAGTGTCATAAAGTAAACATCTGGGAAAGGTGGCTGTGCTTTTATTTTACAGAGAAAAGAAAAGCCTGAATATAAAGCTGGAATTCAAGACTCTTGACTCCCTGGCCAGTGGTTTTTTCCACTACCCCACCAAAACCCAGTTTCCATAAACTACTTTGGTGACTGCCCAGAAGCATGCCCACAGCACTCAATGAACGTCCAGGCCCTTCCTGGAAGGTTTCCATTGTGCACAGGCTTGTCCTCCAATCGCACTTGGTGATTTCCTCATCATATTACTTAGCAGAAATATCCTACTTTAGGAAGAAAGAGAATATCTCTTTCAGAGAGGAAGAAAGTTTGTGAACAGAGATGCCACCGGGAACACTGGCCAGGGCAGGGGTGTTTGATGCTTTAGTTGGTATCCTAGCTGACCAGGTGATTGGGCTTGGGATGATAAAACTTCCAAACTTCCTTAATCTCTGTCCTCATATATAATATGTGCATCATAGTAATTCATCTTACTCTGTATTTCAAGGTTGTAAAGAAGAATTAATTTAGAAAAAGAGAGAATTGACATAAAAATGCTTTAATAACATAAGGTTGTTGTATGAATATAGGAAATTACTGTCAACTTTTATCACCTGGTCAGAGTTTTCTCCCTTAAATACCTCTATCAGCATAAAGAATTATTTTATATGTATAATATAAAAAGCTCCCCCTGAAGATATAGACCATTTTTATTCACTTCAGTTTTTAACCAGGGCTAGGCATATGGTATATATGTCTTCAACATATATTTTTAATTTAATAAATACATATTTTTAATCTTTAAG
Seq C2 exon
GTCTGCAACACTTTCCCTATTCTCATCGACTATTTCCCAGGGAGTCATAACAAACTATTTAAAAATTTTGCTTATATAAGAAGCTATGTTTTGGAGAAAGTAAAAGAACATCAAGCAACTCTGGACATTAACAATCCTCGGGACTTCATCGATTGTTTCCTGATCAAAATGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037559:ENSBTAT00000040300:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]