BtaINT0046190 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018365 | CYP2E1
Description
Bos taurus cytochrome P450, family 2, subfamily E, polypeptide 1 (CYP2E1), mRNA. [Source:RefSeq mRNA;Acc:NM_174530]
Coordinates
chr26:50556718-50560112:-
Coord C1 exon
chr26:50559953-50560112
Coord A exon
chr26:50556868-50559952
Coord C2 exon
chr26:50556718-50556867
Length
3085 bp
Sequences
Splice sites
5' ss Seq
ATGGTGTGT
5' ss Score
4.84
3' ss Seq
CTCCTGCTCCCTCTCCTTAGGGA
3' ss Score
12.23
Exon sequences
Seq C1 exon
CTGGCGGAGAGGTACGGGCCGGTGTTCACCCTGTACCTGGGCTCTCAGCGTGCCGTGGTCGTGCATGGCTACAAGCCCGTGAAGGAGGTCCTGCTTGACTACAAGAACGAGTTTTCTGGCAGAGGAGAAAACCCTGGGTTCCAGATGCACAAGAACAATG
Seq A exon
GTGTGTCCCACTCGGGGTTGGGGTGCTGGGGGGGTGTTGGGGGAGGCCCTGAAGTGACAGTAACAACTTGCTGAAGACAGAAAGGTGATGTGACCCACAGACAAGTCAGGGGATGATTGGTTCATTCAGTCATTGCTCTGCGTGTTTTGATGAAAGCTACTGCATGAACCTTGCACACCAGAGTGGACAAGACCTGGAACATCCACCCACTGACCAGCAAGACAGACATATTCATAGAGAAACAGGCCAGAGGAAGCTGCTTCTGCTGTCTGGCCCAGCAGTGCCTGCCTCCACAGACCTTTCCGCCTCCCTGGGTCCCCAGTCTCTCCCGGGAGCTGTTTCCACTCACAGCTTCAACTGCTCCAGGGTGTTGGGGCTCCATCTACTGAGGTCCCTCACCCACGAATGGCACCCACCTGTCTATTGAGGGGGCCTCTGATGTCCCACCCGGGGCTGTTCTTAGATCAGGAAGAGGGCGCTGAGATGTCCCTGTGACCCCTCTTTCCTCTGCCTCTCCCAGTCCCCAGGCTCCAGACTCAAGAGTTCCCTACGCAGGGGAGAAGGCCTGGGGATCTAACTGGTCTTTATTGGAGTATTTTCCAGAGTCCTGACTTCAGACTCTACCATCTGCATCTCCTGGGAGGTCCTGGGAGGGCTGGGGACACTGGCTGGTGGGGGTGCCCCTCCTGCCCTCCCAGCTCTGAGGGCTCCTGGCCCCTGCTGTCCTCCGACCTCAGCCGCTTGTCCTTGGCTGCTTGCTCTCTGGTGTTTAAGTGAGATTCTAAAGCAGATTAGTGTGAAACAGCATCCCTTCTACCACAAAACTTGGAACCCTCACTTCTTCCTGAGTCAATTTTGTTGATGAGCTTCTGGAAACTCATTTTATGGAGAATTTCCAAACTGATGTGCTTACAGTTGTATATGGACTTCTTGCCTTATTTTTCCAGTCTGCATTTCTGAGGCATTTGATTGTCTGTCTTAGATACTGTGCTTTTGTTTTTCTTCTTAGGAGCTCCTGAAACCAAATTAAGCACCTAAGCTTTGTCATTTACACAGAGGAGGTTTACTGGAGGAGAGCCCTGGGAGGGCAGGAGTTCTGGAGTCAAAGAGCTTTACCATGGTCAGGGGGGGTCAGGGAGGCCTGGTGCAAGTCACGTGCCCCTGGAAGTGGTCAGGCAGAGCCGGCTTCCCCGTCCTGCGGCTGGGACACAAGGCGCCTGACTGCGTCCTGCCTGTGCCACACTGTGGGACACGCACTGCATGTCCACACGGCCTGGGGCTGACCCTGCACATCAGCCAGCCATTGGAACAGGTCTGTGGTCCCCAGGAACAATGACGTGAATGGTCTCGGTTACCATAGTATGGAGCAGCAGCTGCGTGTCAATGTGCTGAGAGGGCCGCCCATCATTTCAGTCAGTCTGCGAGGCTCTGGAAGGGGAGCTTCCTTGCCTCCGTTTCTGCCTGTTTGGTCCCAAACAATGGCGCTCCTCTGGGATCTGTCTCTTTATCTGCATGTCTCTGTGGCTCACCATCTCGGCCTCTGTATCTCTCTTTCTCTTTGTCTCTTCTTACATTTTTCTGTATCTTCTTTTCTTTCTACACAATTCTCCCCAAAACATTTTTAAACTCCCTTCTTCCCTGCCCCTCCCTCCTCAGCCACCTCCTCTCCTCACCACGTGCTCTTCGGAGCGGCCCCCAGCACCTCTCCTTCCTGCCTTTCCTCTAGCGTCTCAGGCCCTTAGGCCTTGGGGCACAGCCTCTGCCCCATTCTCCAGCCTCCTCAGCACACGCTCCCTGATCCCTGGCATCCTTGCTTGTCTGCCCTGTGTCCTGGGCCAGCAACGTGGAGGGCAGAGCTGCCCGGGGCCCAGCCAGGCTGAGGGAGTAGACACCCATGAGTTTGGAATGTCCCTTCCCTAGGTGCCCTCTTGGGCTGCTCTGCTGCATACCCAGCTTCCACTTGGTCCATTATACAATGCCCCACAGGAATCGGTGCCAGGACACCTGAATGCATGACCCTGAGCTCAGTCCTACCTGTACTTTTAACTTGGTGAAGAGTATCTGTAAATGGGCCTCCTCAATGCCCACACACCCGTCAGTGGTCATGCTCTCCATCCGTGGGCTTGTCTGCATGGCTGCCTCCTTGGATCACACACCTCTTCTCCCAGCCCCTCTGGTGCTTCCTCTGCAGGCCATCCAGGTATCCTCTCGGGCCTGGCCAGACTTCCTTCAGGAAAGACTGGGGCCACGGCCTTCCTCAGACCTGGACATGCAGGCGGGAAGCAGCTTGAGGGCTTCCCACATCTCAAGGTCTGCTGGCTGTAGCCTTGGGTGTTAGTAAGGACTTGCTGTGAAGCCACAAAGTGCAAGTCGAGGCATCTGTAACATGAGGGTCAAAAATGACTGAAAGCAATGTTACGTGCCAGCCTGGATGGAAGGGGATTTTCAGAGAATGGAAACATATGTGTGGCCGTGTCCCTTCGCTGTTCATCTGCAACCATCACAGTGGTGTTAATTGGCTGTGCTGCTACTCTCACGTGAAGGTTGCTCAGTTCTGGCCGACTCTTTGTGACCCCGGGAACTACACAGTCCATGGGATTCTCCAGGCCAGAATACTGGAGTGGGTAGCCTTTCCCTTCTCCAGGGGAGCGTCCCAATACAAGAATCGAAGCCAGGTCTCCCATAGCGCAGGTGGATTCTTTACCAGCTGAGCCACACACCCTAATACGAAATGTTTTGGTGGTTAAAAAAAGAAAAAATCACCAAAAGCAAAATAGCCTCAAAGGAATTAGTCAGGAGGCAGGAAAGAGGCGGGAGGCACTTCTTGGTAGTCAGGCATGGTCCCCCTATCGTGGCGGGACGCAAGACATAGTGAGGGAAGCAAGGAGGCTGTGATTGAGGAGCTTACATGAGCAACAGAGGAAACCAGGCTCCACACCAAAGGCCTCCCTGCAAAGCAGAGCGTTGGTCCCTGTGTGGTCAGTGGGCCCCTCAGTGTTCCCTGCAGAGCCGAGCCCATTACTCCTGCCCTCCTTCTCCTGAGAAAAACGTTTGTGGTAATGGTTCTCCTGCTCCCTCTCCTTAG
Seq C2 exon
GGATCATTTTCAACAATGGATCAACCTGGCGGGACACCCGACGGTTCTCGTTGACCACCCTCCGTGACTTAGGGATGGGAAAACAGGGCAATGAGCAGCGGATCCAGAGGGAGGCCCACTTCCTGCTGGAGGTGCTCAGGAAGACCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018365:ENSBTAT00000024437:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.039
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]