BtaINT0046303 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047933 | CYP4F22
Description
cytochrome P450, family 4, subfamily F, polypeptide 22 [Source:HGNC Symbol;Acc:HGNC:26820]
Coordinates
chr7:8636615-8641084:-
Coord C1 exon
chr7:8640963-8641084
Coord A exon
chr7:8636883-8640962
Coord C2 exon
chr7:8636615-8636882
Length
4080 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
TCCTTTTTTCTCCCTGGCAGGAA
3' ss Score
11.72
Exon sequences
Seq C1 exon
GCTAAATGGCGGGGCCTGGCAGAGGGCTCAGAGGTCTCCCTTGATATGTTTGAGCATGTCAGCCTCATGACCCTGGACTGTCTTCAGAAATGTGTCTTCAGCTACAACAGCAACTGTCAGGA
Seq A exon
GTGAGTATGGCCTCCCTAGGGAACACAGAGCCAGCTGCTGCAGGGGCAGGGTGACGAGAGGAGAAAGAAATCTCTTAGCTGTTAGGCACTCCTGGGCTGTTGGTGCTCTGCCACTGACAGGCTGTGTGGTTCTGGGAAACTGACATCACGTCTCTGAGCCTGCTTCCTTATCCCCAAAACGCACATCTCCATCTGGTCCTCATAGTCATCGTAGGGGAATTAAATGAGATAATATGAGTCAATGGATTGGCACACAGTAGATGCTCAGTGAGTGCTAAGTTTAATTCATTCTTCCATGAAAAGTATGTGGTCTTTGGAAAGAGTCCCTCCCCACACTTTCTGAGCCTCAGTTTTTTGTTTGTAAAATAAGAGTGTCAGTGCCTGGCCTGAGAGATGCTTGAAGGTTAAAATGATGTAGCACTGCCCTGGCACACAGTAGGTGATGAGTGGATGTTTGTTGAGTGAATAAATAAAATATCTATTGCCCTGGTTCATTGATTCATTCATCAAATCTCTGTTGTGCAACTACCGCGTGCCTGGCACTATGCTAGCTATGGGGGATATGGTGGTGAGCACTCAGTCCCAGTTCCTTGGGGCTTCTAGTCTAAGTGGGGATATAAGGAATAAGGGACATAATGACTGTCAAGTTTATAGCACATAGTAGGTCCTCAGCAACGAGCTGCTGACTCTGTTACTCTGGGCGTTGTGGTGGTATTGTTTCAGTTAGGTAAGGTGGAGATGGCCTTCATAATTCATTAGTTGATCCAAAAAATATATTTTGAGTGCCTGCTATGTCCCAGCTCTAGAGTAGAAAACGGTGGTCAACAACACAGACAAGGAACTTACATTTTAGTGGGAAGAGGGGCAGTAACCACGAGCAAATAAGCAAGAAAACAGCAGCTGGTGAGAAAGGCATGAAGACAACGAGCACACTTAAGGACAGCTCTTGGCAGCTCTGCCCCTTGCGATTTCGTTTTTCTTTTTTTCAAAATAACAGCTCTACCGAGATGTAGTTGATAAACCATACAATTCACCCGTTTAAATTATACAACCAATGGCTTTTAGTCTGTTCACAAAATTGTGCACCCATCACCATAAATTGATTTTAGAATATTTTCACTGAGAAGAAACCCTGTATCATTGTATTATTCTTTCATCCCCCACTTCCCACTTGCCCTCCAGATCTAGGCAATAACTGATCTTCCTTATGTCTCTGTAGATTTGTCTTTTACGGAAATTTCATGTAGATTTCCATAAAATTCACATAGACACAGAATTTCATGTCTGGTTTCTTTCAGTCAATACATTGTTTCCAGATTCACCCATGTTGTAGATGAATTACCAATAATTAATTTTAAAACTTGTTGAATAACATTCCACTTACCATATAATGTGGTTCAGCAGTAAAGAATCCATCTTCAGTGCAGGAAATACAGGAGATGTGGGTTCAATTTCTGGGTCAGGAAGATCCTCTGGAGAAGGAAATGTCAACCCACTCTAACATTCTTGCCTGGGAAATCCCATGGACAGAGAAGCCTGGCGGAGTGTAGTCCATGGGGTCGCAAAGAGTCAGACACGACTGAGAAGTTAAATGGCAGTACCATATAATATCATGTTTTGCTTATCCAAGCATCTGTTGAAAGACATTAAGGTCTTTCAACATAAAATGTCTTTCAAAGACATAAAATATTTCAATTTTTGGGCTATTATGAACAATGCTGCTATAAATATTTTTGTACAAGTTTCTGTGTGAACATTTTAAATTCTGTTGGGTACATACCTAATCATAGAATTACTGGTCTTTATGATAATTCTTTGTTTAATCTTTTTTGGAACTGCCTAACTTTTTCCAAAAATTGGTTGCAGCATTGTACATTCCTACCAGCAGTATGTGAGACTCCAATCTCTCTACACCCTCAGCAACACTTGTTATTATCTATCTTTTTGATTATTGCCATCTTAGTTGAGGTTAAGTGGTATTTCATTGTAGTTTTTGTTTGCATTTCCCTAATAGATAATGGTTAATTTCCCTAATGGTTAGATAGCGTCACCAACTCAATGGACATGAATTTGAGCAAACTCCAGGAGACAGGGAAGCCTGGCGTGCTGCAGTCCATAGGGTCACAAAGAGTCAGACACAACTTATCAACTGAAAGCAACAATAATGGCTAATACTGTGAAGCATCTTTTCAGGTGCTTATGGGCCAGGTGTATGTCTTCTTTGGAGAAATGTCTTTGCATATTCCTTGCCCATTTTAAAGTTGGGTTATTTGTCTTTCTTATTACTGAGTTTTTATCTGTCTGTTTGGCTGTGGCAGGTCTTAGTTGCAGCACACAGGACCTTTGGTCTTCATTGTGGCATGCAGAACCTTTTAGTCGTCACGTGTGAGCTCTTAGTCATGTGGGGTCTAGGTCCCCAACCAGAAATCAAACCTGAGCCTCCTGCAGTGGGAGGGCAGAGTCTTAGCCATGGGACCCCAGGGAAGTCCTTATTATTGACTTATTTTAAGAGTGCTTTGCATATTTTAGATACAAGCTCCTCATCAGATACACGATTTGCAAATATTTTCTCCCACACTGTGGATTGTAGTCATTTAATTTTAGTGATGCTTCATTTATATGGAAGTCCTCATCTCTCTTTGGGCCTGTTTTAAAATGTACCTAGAATTTAGTTTTATTCAGGTTATGGTGAGGACTACAGATGAGGAAGCAGTTGCGATAGTTTGTTACTTACCATTTCCAAGATGAGGCGAGGGCGGGGGGGGTGGGGCGCAGTATGCCACAAGACACAAGGCTGCCTGGAGAAGCACCAGGACGGGGCATGGCAGGAACATTTTCAGGGGGTCTTCTATGGGAAGGAATGGGAAAGGCAGGGTATGCAGCCTTAGGACAGGGTAGTTTTTTTTTTTAAGTTTTTAAAAAAAGTTTGTTTATAGGTGAGATGAGTCTTTGATGTGGGCTCTTGGTTACTGCGTGTGGGCTTTCTCTAGCTGCCGTGAGCAGAAGCCACTCTCTAGCTGCTGCGGTGTGTGGGCTTCTCATTGAGGTGGGTTTTCTTGTGACAGTGTGTTTTCTTGTTGCAGCTCACAGGCTCTAGACAGCAGGCTTCAGTAGTTGTGGCACATGCCCATAGTTGTCCTGAGGCATGTAGGATCTTAGTTCCTGGACCGGGGATCCAACCTGTGTCCCCTGCATCGGCAGGCAAATTCTTAACCACTGAACAACCAGGGAACTCCTAGGGTTGGCTACTTTGTATGATTTCAGCTGGCTCTGGGGCAGAGAGGTGCCCCAAGTTATCCAGTGCTTGGCCCTGGGATAATTAAGGTAGGGGTATAGTGATTCAGCCCAGTAATGTTTGGAGTATGGACTCTGGATTGGTTAGTTTGCAAAAGAAAGGCATGCTCCTGGGTGAGTCATTTGCTGCCTCTAAGAAACAGCTAGTCCTGGGAGGGGTGGTGTCTGTCCAGTCAGTGAGGCTCCAGATGGACAAACATCTAGAATACAAGGAAATGGACTTCTGGTGGTCCAGAGGTTAAGAGTCCACCTGCCAATGCAGGGGTTCAATCTCTGGTCTGGAAATTAAGACCCCACAGGCCTTGGAGCAACAAGGCCTCTGTGCTACAACTACTGAGCCGGTGGGCCTAGAGCCTGTTCTCTGCAACAAGAGAAGCCACTACAGTGAGAAGCCCATGCACTTCAATGAAGAGTAGCTCCCTGCTTGTCACAATTAGAGAAAGTCTGCATGCAGCACTTAAGACCTAGTGCAGCCAAAACAAACAAACAAACAAGGAAATAAGAAAGTAGAGTTAATTCAGGGCTGCTCTTTGTGGTAAAGAACCCGCCTGCCCATGCAGGAGACATGGGTTCGATCCCTGAGTTGGGAAGATCCCCCAGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGATGAGCCCACGGGGTCACAAAAAGTTGGACACAACTTAGCAATTAAACAACAACAACAACTCTGTCACCTGCCCATTGAGAGAGGAAGCTTGTCTTAGGGCCTATGCTCATGTCCTTTTTTCTCCCTGGCAG
Seq C2 exon
GAAGATGAGCGATTACATCTCAGCCATCATTGAACTGAGTGCCCTGGTGGTCCGGCGCCAGTATCGCCTGCATCACTACCTCGATTTCATCTACTACCGCACAGCTGATGGACGGCGCTTCCGGCAGGCCTGTGACACCGTGCATGGTTTCACCACAGAGGTCATTCAGGAGCGGCGGCGGGCGCTACGCCAACAGGGGGCTGAGGCCTGGTTTAAGGCCAAGCAGGGCAAGACCTTGGACTTCATTGATGTGCTGCTCCTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047933:ENSBTAT00000066325:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(8.6=100)
A:
NA
C2:
PF0006717=p450=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]