BtaINT0046310 @ bosTau6
Intron Retention
Gene
ENSBTAG00000048257 | CYP4F3
Description
Bos taurus cytochrome P450, family 4, subfamily F, polypeptide 3 (CYP4F3), mRNA. [Source:RefSeq mRNA;Acc:NM_001046391]
Coordinates
chr7:8585589-8585845:-
Coord C1 exon
chr7:8585781-8585845
Coord A exon
chr7:8585669-8585780
Coord C2 exon
chr7:8585589-8585668
Length
112 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCTG
5' ss Score
2.64
3' ss Seq
TGCCTCTCTCTGCACTCTAGGTA
3' ss Score
10.06
Exon sequences
Seq C1 exon
GGAACATCTGTGTCATCAGCATCTTCGGGATTCATCACAACCCATCAGTCTGGCCAGACCCTGAG
Seq A exon
GTGCTGCCTTCCACTGGGAAAATCAAACACTCCTCCACTCTGTTCACATCTGGGGGTGTCCAGGTATCCTGAGATGTCCCACCCAGTAGCCCTGCCTCTCTCTGCACTCTAG
Seq C2 exon
GTATTCAATCCCTTCCGCTTTGATCCAGAAGCCCCCAAGAGATCACCTCTGGCTTTCATTCCTTTTTCGGCAGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048257:ENSBTAT00000036384:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.5=100)
A:
NA
C2:
PF0006717=p450=FE(5.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACATCTGTGTCATCAGCA
R:
GCCCTGCCGAAAAAGGAATGA
Band lengths:
141-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]