BtaINT0046886 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007683 | DCAF17
Description
DDB1- and CUL4-associated factor 17 [Source:RefSeq peptide;Acc:NP_001178418]
Coordinates
chr2:25069451-25070380:-
Coord C1 exon
chr2:25070255-25070380
Coord A exon
chr2:25069555-25070254
Coord C2 exon
chr2:25069451-25069554
Length
700 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
AAATTCCTTGTGTTTTTCAGGAA
3' ss Score
9.23
Exon sequences
Seq C1 exon
ATGGGCCCAAGCCAGAAGCCCAACGTGTGCGGTCGGCTCAGTCGCCGGGCGCTGGGCTTTTTCTCGCGCGACGCGGGCATGGTGCAGAGGACGAACCTGGGCATCCTGCGGGCGCTGGTGTGCCAG
Seq A exon
GTGACCGCCTGCCGGCCGGGAGGGGAACGAAGAGCAGCGGGGCGACGGGGGTCGCGGGCGTAGGGGAGAGGCAGACTTGCTGCTGGGCTGCAGTTTTTACGCAGTATAATTCCCTTTTAAGAAGATCGCAAGTGATGGGCAGGGTGATCACGGCCTTGAAATTGGGGGTTAGTAAATAGCCATTAGCAGAACCGTCACATGCTTTATGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAGCCTTGTGGACAGAGGAGCCTGGTGGGCTGCTGTCTAACGGGTCGCATAGAGTCGGACCCGACTGAAGCGACTTAGCATGCATGCATGCGTTGGAGAAGGAAGCGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCAGGGACGGAGGAACCTGGTGGGCTGCCGTCTGTGGGGTCGTACAGAGTCGGACACGACTGAAGCGACTTAGCAGCAGCACATGCTTTTAGTTTTAACTTTCTTATATCTTGCAAACAATTTTTCTAAAAATTAATTACCCCACTTAAGCCGAAATGTGAGGGCAGAGTGAAGAATAATTGAACATACTATTTTTTAAGAACGTACTTGAAGTTATTTTGAAAACTGTAAATTTAAATATCCAATTTAAGATTGGTGCACAGTAGAAACGTATGAGTTATTTCCTAAACCGAAATTCCTTGTGTTTTTCAG
Seq C2 exon
GAAAGTACTAAATTTAAGAATGTTTGGACAACTCATTCCAAATCACCTATAGCCTATGAGAGAGGAAGAATATACTTTAACAATTATCGGTGCTGTATCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007683:ENSBTAT00000010105:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGCCAGAAGCCCAAC
R:
CTGATACAGCACCGATAATTGTT
Band lengths:
222-922
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]