BtaINT0048036 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031809 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr7:19226135-19227096:+
Coord C1 exon
chr7:19226135-19226239
Coord A exon
chr7:19226240-19227005
Coord C2 exon
chr7:19227006-19227096
Length
766 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
TGTTTCTCCCACACCCCCAGTTC
3' ss Score
7.72
Exon sequences
Seq C1 exon
GGCCAGCCTGTCACCTTCAGTGAAGAAGCCTTCTTGGCCCAGAAACCCGGGGCGCCGCTGCAGGCCTTCCACCGGCGGGCTGTGCACCTGCAGCTGTTCAAACAG
Seq A exon
GTGGGCCAGAGCCTTGGGGGCGGGGCTGAGGCCGGAGGGGCGGGGTTAGGGGCGCTGGTGCGCGCATCCCAGAGGGCGGAGCCGGGGCTGGAGGGATGGACGCCTGGGTTCACCCGGCGGGGAGAGAGTTGGCCCTGCCGGATCCCCCACTCCAGGGTCTCCGGGGTGGGAGAGACATGAATTCTTGGGTCTCTAAAAATGGAAGCCCCCTGATCTGAGTTCCTAGGGATAAGCTTTACTTCTGGGTCCCTGAGGAGATTGGGCTGGAACCAAATTATTGAGTCCTAACGCGGGGGCCTCCTGGATCGAGGATGGAGGTTCATGTCAGACTCCCTTTGCGGGGAGGGGAGGCAGGCCGGCCTTTTGGACCCCAGGGATGAGGGGAGGGGGAGGTGGAACCGGACTTTTGGGTTCTGGGAAGAAAGTTGGATGAACTTTAGTGTCCTTCAGGGCGAACTGGCTTCTAGGGTCCCTGGAGGTGGAGTCGACCTCTTCCCAGGGTCACTGAGAGGAGGCAGGCATGTGTGGAGTGGCAATCTTACTTCTCCGACCCTGTGAGCGACAAAGTCTGGTCCCTGAAGACAGATCCTGACTTGGGGTGGGGAGGGGTGGACCTCTGACTTGCTGAGATGGGCTCCAGACTCCTGGGGCCTCATGTTGGGGAAGGGTGGGGCCAAGGATGTCTTGTCTTGATAGGAGTAGATCCCTAGAACTTGCATTCTAATGTTTGGGGCACCCTGATTTCCTGTTTCTCCCACACCCCCAG
Seq C2 exon
TTCATCGAAGGCCGACTGGAGAAGCTGAACACGGGTGAAGGCTTCTCAGACCTCTTCGAACAGGAGATCACTTGTAGTGGGGCTTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031809:ENSBTAT00000045088:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=FE(50.0=100)
A:
NA
C2:
PF0345514=dDENN=PD(5.9=12.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCCTGTCACCTTCAG
R:
TGAGGAAGCCCCACTACAAGT
Band lengths:
194-960
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]