BtaINT0048037 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031809 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr7:19227006-19227237:+
Coord C1 exon
chr7:19227006-19227096
Coord A exon
chr7:19227097-19227196
Coord C2 exon
chr7:19227197-19227237
Length
100 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CTCTGCTCTCTTCTCTGCAGGGA
3' ss Score
12
Exon sequences
Seq C1 exon
TTCATCGAAGGCCGACTGGAGAAGCTGAACACGGGTGAAGGCTTCTCAGACCTCTTCGAACAGGAGATCACTTGTAGTGGGGCTTCCTCAG
Seq A exon
GTAAGCTCTGCACCTGGCCTCAGAGCCTCCACCCCACCAGCACCCCCACCTAAGCCCAACCACCCTGAAGATGCTATGCTCTCTGCTCTCTTCTCTGCAG
Seq C2 exon
GGACACTCCGCTCCTACCAGCTTTGGGCAGACAACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031809:ENSBTAT00000045088:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=PD(5.9=12.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAGGCCGACTGGAGAAG
R:
GTTGTCTGCCCAAAGCTGGTA
Band lengths:
122-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]