BtaINT0048038 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031809 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr7:19227197-19227783:+
Coord C1 exon
chr7:19227197-19227237
Coord A exon
chr7:19227238-19227711
Coord C2 exon
chr7:19227712-19227783
Length
474 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTA
5' ss Score
5.69
3' ss Seq
CCTTGGCTTTCTCTCCACAGAAA
3' ss Score
12
Exon sequences
Seq C1 exon
GGACACTCCGCTCCTACCAGCTTTGGGCAGACAACCTGAAG
Seq A exon
GTAGTAATACCACTTTTAGTGTTTATCACAGGATTAAATTAAACCCATAGCCATCCTCACTATGCCCATTTATAGAAAGAGGTGAAAAAAATCAAGACTCAGGGAGAGGGACTTTCCCGGCAGTCCAGCAGTTAGGACTCCGCACTTCCAATGCAGAGGGCAGGGGAGTTTGATCCCTGGTCAGAGAACTAAAATCCGACATACCACACACACACACAAAATACACACAACAAACAAAAAACCTCTATGCCTATGGTGATAGTTATGCAACTACTGTAAACCTACCAAAAATCATTGAGTTGCGCAAGTAAGGCAAGTGACTTGTATGGTATGTAAATTATAACTCAGTTTTTTAATTTAATAAAAAAGAAGATTCAGAGAGGAAAAAGGGTTTTTCCAGCAACACACAGCCCAGGTGGGCAGGTGGGGTCTAGGATATGCCTATGCCTCTCTGCCTTGGCTTTCTCTCCACAG
Seq C2 exon
AAAGGTGGTGGTGCCCTTCTGCACTCCGTCAAGGCCAAGACCCAACCAGCTGTCAGGAACATGTACCGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031809:ENSBTAT00000045088:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]