BtaINT0048039 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031809 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr7:19227712-19228427:+
Coord C1 exon
chr7:19227712-19227783
Coord A exon
chr7:19227784-19228382
Coord C2 exon
chr7:19228383-19228427
Length
599 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
CTCTTTCGGTTCCTCCATAGGCA
3' ss Score
10.5
Exon sequences
Seq C1 exon
AAAGGTGGTGGTGCCCTTCTGCACTCCGTCAAGGCCAAGACCCAACCAGCTGTCAGGAACATGTACCGCTCG
Seq A exon
GTGAGGCTGGGGTGGACAGACCAGTTACCAGGGTGACCAAGCCAGAGGATGTTTTAACCTTCCGTTTAGAGGACAATTTATCAGAACTGAACCAGCAGTTAAACCAGTTGCAATGTTTCCTACTTTTATTTTCCATTGACTGTGTTCTTTCACGGTTGTCAGATCGTCTTTCCTATTTAAAAATGATCACCAGGACTCTTTGGCAAACATCTTGGGGTATTCCTTCTTAGACACTAACATTTCTGCTTCCACGCTTAGTGTTTTGTTTTTCTCCCAAATCCAAAAGTTTCCTGGGACCGGCTCCCGCAGCTTGGAACCGTCTGTTGAATTTTTATTCTTTGCTCGGCTTTTGAACACGGACTTTTTACGGCGTTCCGGCTTTGCTGCTGCCTGTTTCATTTGGGGGTTATCTCCTCAGGGAATATTCCTTTTGTATTAGTCAAAGAGGCATGTTTGTATTGACGCCTTAGCTGGTACAGGGGGATTCTGAATGTATTTTGAGTCACCCATGAGCAGATGGGGAGATGAATCTGGCCTCAGGGGTGGAGGGCCTGGTTCTCAAATGCCGGTGTCAAATCACTCTTTCGGTTCCTCCATAG
Seq C2 exon
GCAAAGAGCGGCTTGAAGGGTATGCAGAGTCTTCTCATGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031809:ENSBTAT00000045088:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.133
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]