BtaINT0048048 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031809 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr7:19222803-19223133:+
Coord C1 exon
chr7:19222803-19222872
Coord A exon
chr7:19222873-19223052
Coord C2 exon
chr7:19223053-19223133
Length
180 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
3' ss Seq
GATATCCCACCCCCACTCAGGTC
3' ss Score
6.83
Exon sequences
Seq C1 exon
CCACCTGCCTTGGTTTGAGGTGTTCTACAAGCTGCTGAACACAGTGGGGGACCTCCTGGCTCAAGACCAA
Seq A exon
GTGAGACCAACCCTCCGTCATTTCTGCAGGAGTCCCAGCCCCCTGCCCCACCACCACCCAAGCCCTTAGCCTCCCAAGCCTGACCTGGGCCCCTTGACTCCTCTCAGACCATCCAGCCTGAGTCAAGACCCTCAGAGTCCCCAACCCACGTCCTGGCTCAGATATCCCACCCCCACTCAG
Seq C2 exon
GTCTCAGAGGTGGACGAACTTCTTCTAAATCTGCTGCAGCAGCCCCTTCCTGGGACCCAGGCCTCAGTAGGTCTGGAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031809:ENSBTAT00000045088:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(11.3=100)
A:
NA
C2:
PF0214116=DENN=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCTTGGTTTGAGGTGTT
R:
CAGACCTACTGAGGCCTGGG
Band lengths:
142-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]