BtaINT0049358 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006531 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr13:47146353-47154434:+
Coord C1 exon
chr13:47146353-47146483
Coord A exon
chr13:47146484-47154265
Coord C2 exon
chr13:47154266-47154434
Length
7782 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
CCTCCCGTGTCTCTCTGCAGCGT
3' ss Score
12.13
Exon sequences
Seq C1 exon
ATGTCTCATGCAGCCACCAGTGCCTTCTGCCGTTCTATTAAGCTGCAGTGTGAGCTCTACCCCTCGAGAGAAGTGGCCATTTGCTTGGACCCTTACTGTGGACTTGGGTTTGTCCTGTGGTGCCTCTGTAG
Seq A exon
GTGAGTTTTCTCTGTATCTCTATGATATAAGTAAATAATCATGCATGCTTTTTCAGATCACCTGTGAGCTCAGACCTGCTCATGGGAGGGGGCTGCCTGCAGGATGTGGCTCCCTCTCAGCTTGGCTCTGCATGCTGGTAGCCAGGTAGCCACACTGTCCAGCGTCTGGAAAGTTAGTCTCTGTAAAATTTGCTGAAACTAACAGAGACAGCATCTGGGTCCGCTCTGAGAAGCTGTCTGTTGGGAACCTGTTTTCCAAGCAACTCCCAGACCTTGGGCTTGCTTCTTATAGCTCCAAATCGTTGCATATGTCCCAGGCCTAGAACTGTGACCAGGGGCATCCAGGCTCTTTCCTCCTCAGCTTCTCCCTGACTCTAGTTGGGGGATGCTGGGAGCAGGCTCCTCTCCCCTCCTGGCAGGTATCAACAGTATGTATGGAAAGAATGAATGTTTATTGGCATTTTTCTCTAATTGTACATATATGTTCATCGTAGAAACTTTAGAAAACACAAAATAATATAAAGAAGAAAATTAAGCTTTCCATAAGTATACAACCTAGTGAAAGTGAAAAAAAGTGAAAGTCGCTCAGTTGTGCCCAACTCTTTGCAAACCCCATAGACTATACAGTCCATGGAATTCTCCAGGCCAGAATCCTGGAGTGGGTAGCCTTTCCCTTTCCCAACCCAGTTCTCCTGCATTGCAGGCAGATTCTTTACCAGTTGAGCCACAAAGGAAGCCCAAGAATACTGGAGTAGGTGGCCTAACCCTCCTCCAGCGGATCTTCCCAACCCAGGACTCAGACTAGGTTCTCCTGCATTGCAGGCAGATTCTTTACCAACTGAGCTATCAGGTGATTCCACTAAATACACTATTAGCATTTTGGCATATAGTCTTTCAGATTTTATTTTCTAATATAGTGTACTACTTTTTATTAACATTTTCAAATATATGCAAGTATTTTAAGTGTGTAGAAATGCTATAACAAACACCAGGGCCCAGCAGCCAGCTTCACATGGACTGTGTTTTGCCAGTTTTGTGTCAGGGTGATGGAAGTGTTCTAGACTGCATTGTGGTGAGCATTGTTTGACTCTGCAAATTTGTCAAAGTTCTTTTAATTCTGTGCTTCAAATGGTTGGATATATGGTATGCAAATTATACCTAAGTAAAACTTGTTTTGTTTTAAAAGAAAACTCCTTTCCTTGAAGTAACTGAGGTATATGGCACAGACCCTTCCCTGCCCATTCAGGAGGCTAACCAGTGTGACACCACAGGGCGACATGTGTTATCCTGAGTTGTACAACTGCCTTGCTCAGGGTGCCCAAATTGTGAGAGTTATCAATTCTTTGTATGTTTTATCAAATTAATAATCTGAAATCATTGAGTTATAAATGTATACCTTTATATTAGTTACCAGAATGTATTTTTTCTCTTGTTTCCTGGTCAACCATTTTTTATTTTAATTTTTTTTATTTAGGTTTTCTTTTTCAGAGCACTATTAGCTTCACAGCAAGATTGAAGGGAAAGTGCAGAGATTTTCTGTTCCACCCCACCCCCACATGCACAGCTTCCCCATTATAAGCATCTCCCACCAGAGCATATGTTTTTTACAAACTAGGAACCTACCTTGATGTATTATCATCCCAGAGTCTGTAATTTACATCAGAGCTCACTCTTGGTATTGTAGAGAGCCCAGAAACAGACTCAAGTAAGTACAGTCCTTTGAGCTTTGACAGACGTGCAGAAGCAGTACAGCCATACAATGACCTTTTCAAGAGATGGTGTTGGAACAACTGGACATCCATCCCCGCCCCCTGCAAAAAAATGACTCTACACAGAGGCTTTGTGGCCTTCTCAAAAATAGATCAAAATACATCATATACCTAAATGTGAAACATAAAACTATAAAACTAGATGATAACTTGGAAGAAAATCTAGATAATCTTGGGTTTGGTGATGACTTTTTGACATACCTCCAAAGGCTTGATCATGAAAGAAATAATTGACAGACTGACTTTATTAAGATCAGTTATCTCCGCTCTGCAAAAGGCACTGTCAAGAGAATGGGAACAGGCCAGAGACTGGGAGAAAATGTTCCCAAAGTGTTTTTAAATTGTTCTGTTCTTTTTGAAGTTAAGATCTAAACTGAAATAGTTGAGGTTTGAGAATTTCGCAGGAAATAATTTCTTCCCTATAAGCAACCTGCTATTATTAAGTTGGAAAGTATAATAGACAGTGCCAAGAATTCAGTATTGGTTAATAAATGAAACAGCAAGCAATCAACTTTTGTTGGATTGAGACCAAAAAAAGGCAAGTAGAAACTTGGTGAATCAGGTTTTCTGTTGTCCTGTATTAGGATTTAATAGCTTTTTTATTAATGTTGACTTCCATTTACAGAAGTGAAGACAGAGGTGAAACTATGCTTAATTTCCACAAATGTGCTTAGTTTCTCCAACCTTGAACTCCACCCCATGGACCCCACCTTTTCATGCCCATAGCAGTCTGATCAAGCGAATCTTTTATCCTGATGTGTATTCTTAAGAAAGCTAGTAATAGGTGATTTGCATTTTGTTTTCTTCATTTTGGGTCTCCTTATGACAGGATTTAAAAGGAAAATGCTGATAACAATATGGAAACGATAGATTGTCATAATTAAGAAGTGTATCGTTATAGGGTGTTTATGTACATTTTGGTTCCCTAACACACAGGACTCCAGTGTTGTTAACTGAGCTTGGTGTGTGCTGGAAAATGGGATTCCATGGTGACAGAGAAGTGTGTAAACTGGAGCTGGAACAGAAGCCAGGCAGGGGTTCTAGTTCAGGTGGTCCAGTTCATCCTGATTCACGAGTGGGTTGAATAACATTCAGCGCTCATGGAAAACTCCCAAGCCGTGTTTCCTGGTGGATAATTATGACTTGTATGGTGCACGATGTGCAGGGTTGTTAGATCTTGGGCTGTTACCTGGCACTGATCCAATTTTGGCCAGGATTGTTCTTTTAACATCCATTCAGCAGAGGTAAATTTTTCATTATTTTTATTTCTTCCTGCTTAATGCTGCCTTGAGGATTCTCATTGAAGTTGGCACCTGAGCTAAAAAGAAAGCTCTAATTCAGGGTCATTCCACACATGGTCTGTAGGCTGATTCTGGAGTGCCACATTGCAAAGGGCAGAGGGTGCGTTGGTGCCTATGGCACTAAACACCAAGGAGTCGTTCACTTGGGGGCTGCCGCTCGTGTTGGTGTGCTCAGGGGCAGGGATCTCCCTTAGCTCTCATGGCCCCTGGAAAGAAGACGAGAGCTCCAGGCACAGTCACAGGACCTGTGTGTGTGAGGGGCACCCCTGGTGTGCTGTAGATCTAGGCTTCTCTTCAGACCCCAAGTGTGTATTCTTGAAAAGCTGATTGGTTAGAATTGAGAAAACAAGTAGGGCATGCCGGTTTCTCAACCAAATGGAAAAACTGGTTTTAAAGCACTGCAGTATTGTATCGGATACAAGAACTTTGGATAAAAGCGTGTTTTCACAACTGCAGGGCTTGGCTCCATTTGTGCAGGAGTGTTGTTGGATCCATCTGACTTGCAGTAAGTAGCTGTTTGACTAGGATGTCAGTATTGTAATACAGATGTATTTGCTGTTGTGCTGTTTGATCTCTTAAATAACCACCATATTATAAAGTGATCCTTAAAGACCTCAATCAGTTTCCGAAGGACAGATCTTAGAGAAAAATTGACAGAATTTTGAGTGTTACAATTATTGGAATGGCCTCTTACTGAGTTTTATATAATGACTATGAAAATAATTTTTATACGTTTCCATAGGGCTCCAGTGGAATGTGCAGTTTTGCATCTTATGTGAATAACAAAACTTTTACATTAGCAGGATTTCAGAGGAAATATTTGCAAACTTTCAAAGGAAAGTTTGGGGTATTAGAATCCTTTATCCTGAGACCAGGATGTACTGAGACCTGTCAGTATATCCTCAGAAGTCTTGGATTACCTGGTGGCTCAGATGGTAAAGAGTCTGCAGGCAATGCGGGAGACCTGGGTTCAAGCCCTGGGTTGGGAGGATGCCCTGGAGAAGGGAATGGCAATCCAATCCAATATTCTTGCCTGGAAAATCTCATGGATGGAGGAGCCTTTTGTTCTTATGGGTGGGGCCATGCTCAGTAAATCTTTAATCCAATTTTCTGTTGATGGGTGGAGCTGTGTTCCCTCCCTGTTATTTACCTGGGGCCAAACTATGGTGGATGTGGATGTGATATTGTGGATGTGACTGGTGATAGAAGCAAGGTCCAATGCTGTAAAGAGCAATATTGCATAGGAACCTGGAATGTCAGGTCCATGAATCAAGGCAAATTGGAAGTGGTCAAACAGGAGATGGCAAGAGTGAACGTTGACATTCTGGGAATCAGTGAACTAAAATGGCCTGGAATAGGTGAATTTAACTCAGATGACCATTATATCTACTACTGAGGGCTGGAATCCCTTAGAAGAAATGGAGTAGCCATCATGGTCAAAAAAAGAGTCCGAAATGCAGTACTTGGATGCAATCTCAAAAACGACAGAATGATCTCTGTTCGTTTCCAAGGCAAAACATTCAATATCACAGTAATCCAAGCCTATGCCCCAGCCAGTAACACTGAAGAAGCTGAACGGTTCTATGAAGACTTACAAGACCTTTTAGAACTAACACCCAAAAAAGATGTCCTTTTCATTATAGGGCACTGGAATGCAAAGGTAGGAAGTCAGGAAACACCTGGAGTAACAGGCAAATTTGGCTTTGGAATACAGAATTAAGCAGGGCAAAGACTAATACAGTTTTGCCAAGAAAATGCACTGGTCATAGCAAACACCCTCTTCCAACAACACAAGAGAAGACTGTACACATGGACATCACCAGATGGTCAACACCAAAATCAGATTGATTATATTCTTTGCAGCCAAAGATGGAGAAGCTCTATACAATCAACAAAAACAAGACCAGGAGCTGACTGTGGCTCAGATCATGAACTCCTTATTGCTAAATTCAGACTTAAATTGAAGAAAGTAGGGAAAACCACTAGACCATTCAGGTATGACCTAAATCAAATCCCTTATGATTATAGACTGGAAGTGAGAAATAGATTTAAGGGCCTAGATCTGATAGAGTGCCTGATGAACTATGGACAGAGGTTCATGACATTGTACAGAAGACAGGGATCAAGACCATCCCCATGAAAAAGAAATGCAAAAAAGCAAAATGGCTGTCTGGAGAGGCCTTACAAATAGCTGTGAAAAGAAGAGAAGCGAAAAGCAAAGGAGAAAAGGAAAGATATAAGCATCTGAATGCAGAGTTCCAAAGAATAGCAAGAAGAGATAAGAAAGCTTTCCTCGGGGATCAATGCAAAGAAATAGAGGAAAACAACAGAATGGGAAAGACTAGTGATCTCTTCCAGAAAATTAGAGATACCAAGGGAACATTTCATGCAAAGATGGGCTCAATAAAGGACAGAAATGGTATGGACCTAACAGAAGCAGAAGATATTAAGAAGAGGTGGCAGGAATACACAGAAGAACTGTATAAAAAAGATCTTCACAACCAAGATAATCACGATGGTGTGATCACTGACCTAGAGCCAGACATCCTGGAATGTGAAGTCAAGTGGGCCTTAGAAAGCATCACTATGAACAAAGCTAGTGGAGGTGATGGAATTCCAGTTGAGCTATTTCAAATACTGAAAGATGATGCTGTGAAAGTGCTCAATCAATACGCCAGCAAATTGGGAAAACTCGGCAGTGGCCACAGGACTGGAAAAGGTCAGTTTCATTCCAATCCCAAGGAAAGGCAGTGCCAAAGAATGCTCAAATTACCGCACAATTGCACTCATCTCACACGCTAGTCAGTTCAGTTCAGTTCAGTTGCTCAGTCGTGTCCGACTCTTTGCGACCCCATGAATCGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTTCCAGACTTGACTCAGACTTATGTCCATCGAGTCACTGATGCCATCCAGCCATCTCATCCTCTGTCATCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAGCTCTTTGCATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCAGGGCTGATCTCCTTCAGAATGGAGTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAACATCAATTCTTCAGCTCTCAGTTTTCTTCACAGTCCAACTCTCACATCCATACATGACCACTGGAAAAACCATACCCTTGACTAGACGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTCAATACGCTGTCTAGGTTGGTCATAACTTTTCTTCTAAGGAGTAAGCGTCTTTTAATTTCATGGCTGTAGTCACCATCTGCAGTGATTTTGGAGCCCAAAAAAATAAAGTCTGACACTGTTGCCACTGTTTCCCCATCTATTTCCCATTACTCAGCTCTAAAAAAAGAATGAAATAATGCCATTTGCAGCACCATGGATTGATCTAGAGATTATCATGCTAAGTGAAATAAGCCAGAGAGAGATAACATATGACATTGCTTATATGTAGAATCCAAAAGAAAAAAGATACAAAGGAGTTTATTTACAAAGCAGAAATAGACCCACTGACATAGAAAACAAACTTATGGTTACCAAAGGGAAAAGTGGTGGGGAGAGGGATAAATTAAGAGTTTGAGATTAACATATACACACTATTATATATAAAATAAAATAGGTAACGGGAACTATACTCAATATTTTGTATTGCCATATGAGGAAAAAGAATCTGAAAAAATACATCTGTGTGTGTGTATAACTGAATCACTGTGCTGTACCCTACAAGCTAACAGCTTTGTCAGTCAGCTACTCCATCCAGGCGTCCCTGGGGCTCAGATGGTGAAGAACCCGCCTGCTGTGTGGGAGACCTGGGTTCAACCCCTGGGTTGGGAAGATCCCCTGGAGAAGGGAGAGGCTACCCACTCCAGTATTCTTGCCTGGAGAATTCTATGGACAGAGGAGGCTGGGGGGCTCCAGTCTGTGGGGTCACAGAGCAGGATGTGACTGAGCCTGCACACAAGAGAATGCATGTATTTTCCTTAGTTCTTTTTTGGTATTTATTTAGATCATTTTGAGTGAAATTATAATCCTATTCTAGTTGTCTTAGTTTTATTTACTCTGAATGTCAGTTTTCTGAATTCGAGTTGGGCATGCTTTTCCTCAGTTGGCTGTTTAGTACACATGTAGCCTGCATGGCCTCTGTTGCAGCCCTCTTCTCTGCCTGTTGATGTGGCCACGGAAGACAGTACTGCAAGGACTGAGGGCCAGGTCCCAGTGAAACTTCGGTTGCTAAACCAGATAGCATCCAGTTCATTAACTGCTCTTCCGAACTTTCAGACCTTTTAACCAAAATTCAGTCCTATGTTTCCTACTGTGAGATTCAGTTTGTTAGTGTAGTAGCTTTTAGAGAAACCTACCAGCATCGTAGCTTTGAGATACCTCACTTAAGTGCTCAAAATGACAGTAACTGCAGATCATAGTTACATAATTCTTTTGTATTGTTCAGAATGTTTTCATAAACACCTTTTGTTTTTTATTTAAAAACACCGAGAGTAGAGTTGATGTGACTGTACCCTCTTGCAAATGGAAGCAGATGTTTCTCAGAGGCCAGTGGATCCCCCTCCTCCATCCTCGCTGAGCCCTCCCGTGTCTCTCTGCAG
Seq C2 exon
CGTGTACTCTGGGCACCAGTCCATCCTCATCCCACCGGCAGAGCTGGAGACCAACCCTGCCTTGTGGCTGCTTGCTGTGAGTCAGTACAAAGTCCGGGATACGTTTTGCTCCTATTCAGTGATGGAACTGTGCACCAAGGGGCTGGGATCACAGACAGAATCCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006531:ENSBTAT00000015282:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.1=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development