BtaINT0049810 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022715 | DMBT1
Description
deleted in malignant brain tumors 1 [Source:HGNC Symbol;Acc:HGNC:2926]
Coordinates
chr26:42797192-42798113:+
Coord C1 exon
chr26:42797192-42797386
Coord A exon
chr26:42797387-42797742
Coord C2 exon
chr26:42797743-42798113
Length
356 bp
Sequences
Splice sites
5' ss Seq
CTTTCCAAG
5' ss Score
-32.44
3' ss Seq
CAGGGGTTAATTGGCTTTGGGTA
3' ss Score
-4.19
Exon sequences
Seq C1 exon
GTTGGAGACACACAGTAGCTGCAGTTATGACTATGTTGAAATCCTTAATGGACCGCTGAGTAGCAATGCCTCAGCGAGGAGAATCTGTCGTTACACCAGGGAAATATTCACTTCTTATTCCAACCGATTGACTGTTCGATTTCGGAGTGACGGCAGTGTCCAAAAAACTGGTTTTTCTGCTTGGTATAACTCCTT
Seq A exon
TCCAAGAAGTGAGTACCAGACATAGAGAAAAGATCTGTAGTTCCCAAGGGGATGGGGTTTTGGGGAAGGGGTGGATGCAGATTTGGGGATTAGCAGATGCAAACTACTACATTCAAATGGATAAACGTCAAGGTCCCACTGTAGAGAACAGGGAGCCATATTCTGTAACCTGTGATAAACCGTGTGGAAAGAATATGGAAGCAGATGCGGAAAAGAATATATCTAGAAGATGGGGGATCTGAACTCTGTGATGTCAAGAGCCCCTTCCAGGTGGATCATGTAGCTGTTTATTCACTGATCAGTGTCATTGGGTGGCTTTTGGGATGGGGAAAGAACCAGGGGTTAATTGGCTTTGG
Seq C2 exon
GTATTTGCTGGGGGATGGGGTCATCACCTCTTACAGCATGTGTCTTTCAGATGTCAGCTTGAGATTGGTGAACTGGAACTCCTCCCATCCCACATGTGCTGGGCGTGTGGAAATCTACCATGGTGGCCAGTGGGGAACAGTGTGCGATGACAACTGGGACGTTCAAGATGCCCAGGTGGTGTGCAGACAGCTGGGCTGTGGATATGCAGTCTCAGCCCCAGGAAATGCCTACTTTGGCTCTGGCTCTGGTCCCATCACCTTGGATGACGTGGTGTGCTCAGGGGCGGAGTCCAATCTCTGGCAGTGCCGGAACCGAGGCTGGTTCTACCACAATTGTGGCCACCATGAAGATGCTGGAGTCATTTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022715:ENSBTAT00000015890:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(56.9=93.9)
A:
NA
C2:
PF0053013=SRCR=WD(100=78.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTAGCAATGCCTCAGCGAG
R:
GACTGCATATCCACAGCCCAG
Band lengths:
349-705
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]