BtaINT0049815 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022715 | DMBT1
Description
deleted in malignant brain tumors 1 [Source:HGNC Symbol;Acc:HGNC:2926]
Coordinates
chr26:42802372-42803847:+
Coord C1 exon
chr26:42802372-42802580
Coord A exon
chr26:42802581-42803662
Coord C2 exon
chr26:42803663-42803847
Length
1082 bp
Sequences
Splice sites
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
3' ss Seq
TGTCTGCCTTTGGCCCCCAGAGC
3' ss Score
9.63
Exon sequences
Seq C1 exon
GCTGGAAGGCGGCTGTAACTATGATTACATTGAAGTGTACGACGGCCCCCACCACAGTTCCCCGCTGCTCGCCCGGGTTTGTGACGGGTCAAGGGGCTCCTTCACCTCATCGTCCAACTTCATTTCCATCCGCTTCATCAGCGACATCTCCATCACCAAGAGAGGGTTCTCAGCTGAATACTTCTCCATTCTTTCCAATGAGAACACGA
Seq A exon
GTAAGTCCCTGCCCATCCGGGGTGACACCTCTGAGCGCCTTCAGTGGCTCAGCCATCCCAGGGCTGTGGAAGGAGAAACGAGAGCCACCCCATCAGGCCGCCAAGGCTTGGTGTTGGGCAGAAGGGGGCCAAGAGCAGGGGATCTGGGGACTCTGGCTGCCCAGGACTGGCCGATGGGTGGTGGGTTGGCCTTTCTATGGTCAGCAGAGACGAAGTAGAAGGGGTGAGAAGATGCTGTCATCAGACAGTGAGATGTCAGTGCCAAGGGCAGAGGGGACCACCTGGCTTGAGACCTTGTGGCCTTCCCAGAGTGAGGGACACTGTGACCTTGTCCTGAGATCTAGCACATTCAGCTGATTCCTGAAAGTGGTCTGAGCTGCTCTCTCAGCCACATCCAGCAGAGGATGGCAGCCATGGTTGGATCTGTTAAATGGACTGATGTACAGATTGACCAGAGGCTGGGCAAAGAGATGTGCTGGCTATCTTTGCAGTCAGGATTTTAAGCACTGACCTGCCCTTAGCTGCAGGACCTATGCTAAGTCCATAGCTAAGGATGTTGATTTCCCAACATCCCTGCAAGTTGCCCCAAGTGTAACTCTGTGTGTATGTGTGTTAGTCGCTCAGTTGTGTCCGACTCTTTGCAATGCCATGGACTGTAGCTCATCAGACTCCTCTGTCCATGGAATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTCCCTTCTCCAGGGGATCTTTCCCACTCAGTGATTGAACCTGGGTCTTCTGCATTGTGGGCAGATTCTTCACCATTTGAGCCACCAGCAAAGCCCAAGTGCTATCCTACTAAAAGGATAAATGGCAACCTGGCAGAAACATTTTGTTGTTTTACATCTTGCCTCCATTTCTCCATCAGAGGAATCCTAGTCCCTGTGCCCTCATAGGGGTCTCAGGCGAATGAAACTGACTTGAGCCCCAGGGCATCTGGAGGGGGGTTGGTGAGCTGTGTCCACAGGAAGACCATGGGCCAGCCATCTCAGTCTTTCTGTGGGCTTAGCGGGGGTGCGGTGACTGACTGCACTGTCTGCCTTTGGCCCCCAG
Seq C2 exon
AGCTGCTTTGCCTGCAAAATCACATGGAAGCCAGAGTGAGGACGAGCTACCTCCAATCCCTGGGCTACTCTGTCAGGGACCTTGCCATTCCCGGCTCGGACTCAAGCTACCAGTGTCAGCCCCAGATTACGTCGAGCCTGGTGACGTTCGTGATCCCCTACTCCGGCTGCGGCACCATCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022715:ENSBTAT00000015890:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(56.1=84.5)
A:
NA
C2:
PF0010018=Zona_pellucida=PU(23.7=95.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGAAGTGTACGACGGCC
R:
GGAGTAGGGGATCACGAACGT
Band lengths:
347-1429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]