BtaINT0049892 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013347 | DMPK
Description
dystrophia myotonica-protein kinase [Source:HGNC Symbol;Acc:HGNC:2933]
Coordinates
chr18:53760689-53761238:-
Coord C1 exon
chr18:53761149-53761238
Coord A exon
chr18:53760812-53761148
Coord C2 exon
chr18:53760689-53760811
Length
337 bp
Sequences
Splice sites
5' ss Seq
AGGGTACGT
5' ss Score
9.15
3' ss Seq
CCCTCGCCCTCTCCCTGCAGGTC
3' ss Score
14.71
Exon sequences
Seq C1 exon
CTAGATGGCCCCCCGGCCGTGGCTCTGGGCCAATGCCCGCTGGTGGGGCCAGGCCCCATGCACCGCCGCCACCTGCTGCTCCCTGCCAGG
Seq A exon
GTACGTCCGGCTGCTCACGCCCGCCCGCCGCGCGCCCCCGCCCAGCTCCACGTACCCGAAGTCGCCTCTGCTTAGCAGCGCCTCTGCGGGGCTCGGCCATTGGTGGGGAGGGGAGGGGTCTCGGGCAGCCAATCAACACAGGTCTCTAGGAAGCAGCCAATAATGAGTTCGGACAAGACTTAGGTTTGCGAGCCGGCCAACCAGAGCTACCCGCCCTGTGAGGGGGGCGGGGCGGGTGCCGGGGGTTGTGGACCCTCTTAGGCGTAGGCGGGGCAAGTCCCGGGAGCCAATCAGAGGCTCGCGTCGCTGGGTGCTGACCCTCGCCCTCTCCCTGCAG
Seq C2 exon
GTCCCTAGGCCTGACCTATCGGAGGCGCGTTCCTTGCTCCTGTTCGCCGCTGCTCTGGCTGTTGCCGCCGCCCTGGGCTGCATTGGGTTGGTGGCCTGCGCCGGCCATCTCACCGCAGTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013347:ENSBTAT00000017759:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF139491=ALIX_LYPXL_bnd=PD(6.5=23.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development