BtaINT0049898 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013347 | DMPK
Description
dystrophia myotonica-protein kinase [Source:HGNC Symbol;Acc:HGNC:2933]
Coordinates
chr18:53765072-53765623:-
Coord C1 exon
chr18:53765417-53765623
Coord A exon
chr18:53765336-53765416
Coord C2 exon
chr18:53765072-53765335
Length
81 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
TCCCTGCCCCTTCCGAGCAGGAG
3' ss Score
7.27
Exon sequences
Seq C1 exon
GTGCGGTCGCTGGTGGCTGTGGGCACCCCGGACTACTTGTCTCCCGAGATCCTGCAGGCGGTGGGCGGCGGGCCGGGGACTGGCAGCTACGGGCCCGAGTGTGACTGGTGGGCGCTGGGCGTGTTCGCCTATGAAATGTTCTACGGGCAGACGCCCTTCTACGCGGACTCCACCGCCGAGACCTACGGCAAGATTGTGCACTACAGG
Seq A exon
GTGAGCACCGCCCGGGGAGCCTGTGACCTCTCCGCAAAGGCTCCCAGGTAACAGCCCCTCTTCCCTGCCCCTTCCGAGCAG
Seq C2 exon
GAGCACCTCTCTCTCCCGCTGGCCGACACAGGCGTCCCCGAGGAGGCTCGAGACCTCATCCAGCAGCTGCTGTGTCCCCCGGAGGTGCGCCTGGGCCGGAACGGAGCAGGGGATTTCCGGAAGCATCCTTTCTTCTTTGGTCTTGAATGGGACAGCCTCCGAGACAGCGTTCCCCCTTTCACGCCAGATTTCGAGGGTGCCACGGACACGTGCAACTTCGATATGGTGGAGGACGGGCTCACTGCCATGGTGAGCGGGGGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013347:ENSBTAT00000017759:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.193
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(25.3=100)
A:
NA
C2:
PF0006920=Pkinase=PD(16.4=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACGGCAAGATTGTGCACT
R:
GGCTGTCCCATTCAAGACCAA
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development