BtaINT0050257 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30551963-30554050:+
Coord C1 exon
chr4:30551963-30552094
Coord A exon
chr4:30552095-30553889
Coord C2 exon
chr4:30553890-30554050
Length
1795 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
TGATCAGATGACGTTTTCAGGTC
3' ss Score
4.67
Exon sequences
Seq C1 exon
ATTTCTCAGTTGAATACACTGATTGCACTTCTGCTGGGAGAACTTCTACCTGGAGACAGGCAGAAGATCATGACAATTTGTACCATCGATGTCCATGCCAGAGACGTGGTGGCAAAACTTATTTCTCAGAAG
Seq A exon
GCAAGTTGTAGAGATTTCATGTATTTTTTGCTCTTTACTAAAAGTGGTGTTTTTGTCAAAAATATTTCTGAGAAAGCAGTTTTTTTAAGTTGGTATTTTTGATTAGTCCTAAGAAATTGGTTGTACTTACTTTGGATACATTTTATATGGGTTAACAAATATATTATCCTTAAAAGAGTTACCCCAAGTGATATCCCCAGGGATTTGGCCTCGTAAGGCTCCTCTATTTCAGATCATCCAAAAATTAAGCCAGGATGTGGGACCTCCAAGAAGTCATGTGTTCATTTCCCTGCTTTGTGTCTTCTCTACACCTAAGCATCTTGCCCATTGGCCTGTGGTGACCACCTCTGTGGCTTATCCCGTCAATAGCAGTAAGATTGTGGGCCACCTCAATCATCTCTGTGTGCCTTTGATTAGTTTCTTTTTGAAGAAAGAGAAATGTTGGCCACCCCTTGTCTTTTCCATTCCAGGCTAAATTACTTGAAAAAAAAAAAAAAAAATAGTAGTTACTTTCTATTCCTTTCAATGCATTGTTTACCTTCTTTCCTTATCTCTTTAAAAAGTTCATGTATCTCTTTGATACCTCCAGTGTTTAATGTGGAAGGAGAATTACTCATCCTTTTTTCAAAATATACTCCTACTTAAAATGTCAGAAGTACGATCGTCTAGTGAACAAAACTGACATACCATGCCCATAAAACTACTTTTTCCGAATCTCTCTTTTCTTTTTTTTTTTGAGGGTGGTAATTACCTTCATGGTTTGAGGGTATGCTTATATTGTGACATATTTTCTGTTGTTTTTCTAGTTCATTCTCAATTTATTAAAATCAAAGCGAATTTTAATTCTCTCCACAAAGTGCAAGCAAATGCTTCCTCGTGTGAACATAAAAAGAAACAGTTCTTGATCCAGGCTCAGGAGACTTACTGAATAATGTTGTTTAAATCCTAATCTAAAATTTGTCCTTGCAAAATACTCTTACCATGTGTTCTCATTTTGATGATGAGCCATTGATATGACCTTGCATATTTTATTATTTTTTTAATCAGTGATGGTTTGCTTGCAGCAGCAGTTTTAATTTAAAATATGTTCTTTATTTTGTACTTAAAGAGATAAAGACTTTGTCTAATTCCTGCTCATTTGGTGTGCCTAAATATGCAATGTGGAGACTCAGGTAGACATAGACAATGAGCAGATAATAATTTTGGTAACTTCAAGTGATTCCTAGGAAATCCTTGGGTCACATTGGATCTGGAAAGAGACTGGAATTATTTTTCAAACTAGGAAATAATGGATAGAATTGAGTAAAATAAGAAATAATGGCAATGAAAAAATACTGTTGTTTGACCTAATGAAAAATGGAGTGGAAATCTGTAATAAAAGCAAAACAATTTTAGAATGGACTTGGTTGAAAGTGTAGTTTGTTTATACGTCTGACATGCTGAAATAATGGATTATGTGCTTTTTCCATCTGATTCCACTGATATGAATATAAAGTCACAAAACTGATCCAATCCTCTAGGGTGATTCACAAAAGAGGAAAAAGCATTGCATCAAGAAATTGATGTTGTTGTACAGTAATAGCCTTCTTAAAACGAAGACTTTTACTACACACATATTTCTGATTAAGTATTCAACCATTTACACGCAATTACAGTTTGCAGGAGCATGCAAGAGATTTCCCTTTTGTGAGATTTTTTAGGAGTAAAATGGGACTCAACAGAGTTAATTAATGGATTACATTTGTGGCCTTAAAACTTTCAGTGTTCATGTGTAGTGATCAGATGACGTTTTCAG
Seq C2 exon
GTCGTCACTCCCGAGGCTTTTGCTTGGCTCTCTCAGCTTCGTCACCGGTGGGAGGATACCCAGAAACATTGTCTCGTAAATATCTGCGATGCCCAGTTCCAGTACTTCTATGAATATTTAGGAAACAGCCCTCGACTTGTGATCACTCCTCTGACTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078:ENSBTAT00000061103:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127742=AAA_6=PU(8.2=35.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGTTGAATACACTGATTGCACT
R:
TCAGTCAGAGGAGTGATCACAAGT
Band lengths:
287-2082
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]