BtaINT0050286 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30670513-30673154:+
Coord C1 exon
chr4:30670513-30670626
Coord A exon
chr4:30670627-30673010
Coord C2 exon
chr4:30673011-30673154
Length
2384 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
GTGTGTGTGCTTTTCTTCAGGTC
3' ss Score
11.91
Exon sequences
Seq C1 exon
GTGACAGCCATTCAGACTGAAGTGTCCCAGAAACAGAGGGAGTGTGAGGCAGACTTACTGAAAGCTGAGCCCGCGCTGGTGGCTGCGACAGCTGCCCTCAATACACTCAACAGG
Seq A exon
GTAAGAATGATTCCTGGGCTCAGGGTTTTCTCAGAACAATATTTGAAGGTTATTAGAGTTTGAGTAACTGAATTGAGAGTGAAATCCATGCAATCAAAAGGAAAGAAAGTCCCATAAAATGTTACAGTTGAAACAACTATTTAAGGACATCATTGAGGTCATCGTAGTTGAGCTGCCTTTCCCATCCGAAAGTCTGTCCCCCTTGACCCCAGCATGTAGTCTCGTTTTGAATACTTCCAATGCCATGCAGTTTATGCTGTCATAAAAGGCAACTCTATTGTTAGCGCTTAGATTTGGCCCAAATCCAGTGGTTCATATTACATGTTGCTTTAAAAACTAAGTGGAAGATTCTTTATTTCCTCTGTTGCTTTAAGAAGTAAGTGGGGGATTCTTTATATCTTCTGGATATTTCCTATTATGAATATCTTATAAAAGTAGTATTAATGAGAGACCCTCGGGGACAGAAGAAAAACCTGGAAGCAAAGATACCTAGTTTTGACCCACACCATTTTTCCTAAATTCATGTTATTAGCAAAATCTCATTGAGCATTCAAATTCCCATAAGAGAAAATAAACTGTGGTGGTCAGAAGGACTGTGTAAAGAGAGATGGAATTATGGGCAATGTTATTTTAAAAACTGGCAGCTGGTCTTGCCTTTCAGTTCTGCTAGGCCTCTGGGGAGATTCCCAGGGCATTACTAGGCCTGGGAGTCTTGGACTCACCTTCTAAGAAGAAAGGATCCAGACTTCCACTGCTCTTCAAAGAAATATTCCATTCATTTCTCTCAGTATTCTTTTGAAGAAAATAATTTTGACTGTGAACAGAGAGTTATTATCTTCATGGATGTTTCTTTTAGCATTGCCATAAAGTTAAACAGTTTAAAAGAACATAAGTATACTGTGATGGAAGATTGATTATTCTGCGTTCAAATAACCTGCTACCATTAAAATGAGAATTGTTAAATCCTAGCTAGCAATGTGAAAAAATGTTCATGATCTATTAAGTAAAAAAGGCATAGTATAAAATTGCATATATTCTGACTTTTTTTAATAAGAACATGCTTATACATAGGAAAAGGTAGAAAAAAGCTAAAAGTAACAGATTATCTCTGAGTAATGAATTTTATACTTTCCTCTTTCTGAGCTCTAGAATGTTTATGTTGTTCTTTGTGCTTTATATTGGCAGCTTTTTCTCTGAGTATATTATTATTTACTCAATCAAAATAAATTAATATCACTTAAGTATAAAGCTCAGTATATTTATAAATGATGAAAGGATTTTGGTAACTTAGCTCTCAGCATTAGCATACTTTACTTTTTTTTTTGCTTTTGTTCTTGTTTTCACACCCTTTCTCTTCTCTGCAGTCATTTCCCAAATGAAAAGGCAGTTTATGGTAATAGAGGAGAATCAGGTTCAACATTTGATGAGATTTTATAAGTAAGAGTATATAATACAGTTCAGGAAATTTCATAGAAAATCCTTTAAAAAAAAAACATGTATCGTAAACCTACATATACTTCTTACAGATATTAATTCTTACTCCAAAGTATTTGCCCTGATACTTGTAACTTAATTGCCCTGATACTTGTAACTTGTACATTAATACTATCTCTTGAGTAAATTAAGATTCTGACCTTCAGAGACTAAGGAGGAATGTAGAAAGAAGGTTCAGCCTCTACGGGCATCTTCCTGGTTGAGTCATTATAGTGTAATAGATGCTTCCTGTACATATGAAGCAGAAAGACAAAACTAAGAGATTCTGAGCTAAAGGACTCTGTTTCTGGGTTGTTGCAGTTATTTAGTCGCTAAGTTGTATCTGACTCTTTGTGACCCCGTGGACTATAGCCCACCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCAATCTCCAGGGTATCTTCCCTACCCAAGGATCAAACCCTGTGTCTCTTGAATTGGCAGGCAGATTCTTTACCACTGCACCACCAGGGAAGTCCCTGTTTCTGGAAGGCCTGATTCAAAGGCAGTTATATTACATAGGTTGGATGAACCCATAAATACCCTAAAACCTGTACATTTATGAAATTCCCTGGCCTCAGTGTGCACGACTCTGCAGGTGGTACATCAGGAAGATAAATTTACTTGGAAGCCAAAAAAGGCAGTGATGTTTTCAAAGTATCAGAAAAGTGCCAGAAAGACCTGGACCTACTGGTGTCCCACAGTGGGATCTCTGCGAGGGCTGCAAAAACTGCCAAACCAAGAGTGGTGTGAAGAGGAGAGGGTGGAAAAGACCAGCCACTGAAGACCAGCTTAATGACCCAACAGTGGTTGTGAGAGAGCAGAGCGCCCTGGTCTTGAGAGTGTGTGTGCTTTTCTTCAG
Seq C2 exon
GTCAATCTCACTGAGCTGAAAGCCTTTCCCAACCCTCCAAATGCAGTCACCAATGTTACTGCGGCTGTGATGGTCCTTCTGGCTCCCCGGGGCAGAGTGCCGAAAGACCGGAGTTGGAAAGCAGCAAAAGTCTTCATGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078:ENSBTAT00000061103:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(10.7=100)
A:
NA
C2:
PF127772=MT=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]